View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1787_low_11 (Length: 491)
Name: NF1787_low_11
Description: NF1787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1787_low_11 |
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Alignment Details
Target: chr7 (Bit Score: 425; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 17 - 478
Target Start/End: Complemental strand, 48594052 - 48593585
Alignment:
| Q |
17 |
atgaaaggaagatcaaatagcaaaactatgagaaaattaaaacaatcaccctgcattgcaggcgatatcctgttactgcttctctctacataatacaaca |
116 |
Q |
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| T |
48594052 |
atgaaaggaagatcaaatagcaaaactatgagaaaattaaaacaattaccctgcattgcaggcgatatcctgttacagcttctctctacataatacaaca |
48593953 |
T |
|
| Q |
117 |
tttcctacccttacctaattcctataactccttgccactatatattcaatatttagtcataaaattgtaggattagtttagttatctcaatatctaatat |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
48593952 |
tttcctacccttacctaattcctataactccttgccactatatattcaatatttagtcataaaattgtaggattagtttagttatctcaatatctagtat |
48593853 |
T |
|
| Q |
217 |
cacataatataactccgtacctccgttgacatttatagagacccttatacttgg------tattctttcaagaaagctataatttcttgttcttatacct |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||| |
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| T |
48593852 |
cacataatataactccgtacctccgttgacatttatagagacccttatacttggtttgcatattctttcaagaaacctataatttcttgttcttatacct |
48593753 |
T |
|
| Q |
311 |
tgttattacattaataaagtaaggaatttccttatatttactgtttatgcctttagtttatcttgttttgtttatgatggaatctagtgagtaggcaccc |
410 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48593752 |
tgttattacattaataaagtaaggaatttccttatatttacggtttatgcctttagtttatcttgttttgtttatgatggaatctagtgagtaggcaccc |
48593653 |
T |
|
| Q |
411 |
tttgtcttggaattgtggaaagaagtcacaacgaatattccataaatctctgttctctttgtttctat |
478 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48593652 |
tttgtcttggaattgtggaaagaagtcacaacgaatattccataaatctctgttctctttgtttctat |
48593585 |
T |
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