View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1787_low_12 (Length: 480)
Name: NF1787_low_12
Description: NF1787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1787_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 187; Significance: 1e-101; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 195
Target Start/End: Original strand, 37514363 - 37514557
Alignment:
| Q |
1 |
aagaaatattgactttgtaagcacaattattgtacaaagaaagcacgatgcacaattctacataacacaataagcaataatgaacaataagctattttcg |
100 |
Q |
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| T |
37514363 |
aagaaatattgactttgtaagcacaattattgtacaaagaaagcacgatgcacaattctacataacacaataaacaataatgaacaataagctattttcg |
37514462 |
T |
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| Q |
101 |
gtaaacaatttctacataacataaatagacaataaacaattttctacagaataagcaattatcataaacaagcatcggcatgctctatcacgcgg |
195 |
Q |
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| T |
37514463 |
gtaaacaatttctacataacataaatagacaataaacaattttctacggaataagcaattatcataaacaagcatcggcatgctctatcacgcgg |
37514557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 188 - 462
Target Start/End: Original strand, 37514849 - 37515120
Alignment:
| Q |
188 |
tcacgcgggatatcctcagagccctgaatccacatatctattgcttgtcaacacaattcaacatgatcttacttcaagcattgtaatgtttgcacnnnnn |
287 |
Q |
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| T |
37514849 |
tcacgcgggatatcatcggagccctgaatccacatatctattgcttgtcaacacaattcaacatgatcttacttcaagcattgtaatgtttgcacaaaaa |
37514948 |
T |
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| Q |
288 |
nnnnngtagaaaatacttaacacagtcaactccatgttcacaaacnnnnnnnnnntggaagaacgttatttgcacataggtgttcttacaaaattgatta |
387 |
Q |
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| T |
37514949 |
aaaaagtagaaaatacttaacacagtcaacaccatgttcacaaa---aaaaaaaatggaagaacgttatttgcacataggtgttcttacaaaattgatta |
37515045 |
T |
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| Q |
388 |
tagcagcgctatagcacatcaaaatggaggaggaaggagaaattggaggatggattggcttaccttatctgagag |
462 |
Q |
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| T |
37515046 |
tagcagcgctatagcacatcaaaatggaggaggaaggagaaattggagaatggattggcttaccttatctaagag |
37515120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 29 - 70
Target Start/End: Original strand, 35390538 - 35390579
Alignment:
| Q |
29 |
attgtacaaagaaagcacgatgcacaattctacataacacaa |
70 |
Q |
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| T |
35390538 |
attgtacaaagaaaccacgatgaacaattatacataacacaa |
35390579 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 218 - 279
Target Start/End: Original strand, 44459977 - 44460039
Alignment:
| Q |
218 |
cacatatctattgcttgtcaacacaattcaacatgatcttacttc-aagcattgtaatgtttg |
279 |
Q |
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| T |
44459977 |
cacatctctattgcttgtcaacataattcaacatgatcttacttctaagcattgcaacgtttg |
44460039 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 132 - 174
Target Start/End: Complemental strand, 39017832 - 39017790
Alignment:
| Q |
132 |
ataaacaattttctacagaataagcaattatcataaacaagca |
174 |
Q |
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| T |
39017832 |
ataagcaattttctacataataagcaattatcataaacaagca |
39017790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 49 - 86
Target Start/End: Complemental strand, 32977309 - 32977272
Alignment:
| Q |
49 |
tgcacaattctacataacacaataagcaataatgaaca |
86 |
Q |
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| T |
32977309 |
tgcacgattctacataacacaataagcaataatgaaca |
32977272 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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