View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1787_low_13 (Length: 479)
Name: NF1787_low_13
Description: NF1787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1787_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 355; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 18 - 396
Target Start/End: Original strand, 45000224 - 45000602
Alignment:
| Q |
18 |
agtggtttccaaaagagatcatgacttctgaatatggcatgtccagggaactctttggtgatgaaacttactgttattggtgcactgaattccatgattc |
117 |
Q |
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| T |
45000224 |
agtggtttccaaaagagatcatggcttctgaatatggcatgtccagggaactctttggtgatgaaacttactgttattggtgcactgaattccatgattc |
45000323 |
T |
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| Q |
118 |
caccatttgatgttattactttgattgttgtatcagaatctgccatggccccaacgaagcagtttcccattttggagtttcaaacctatgttggtggatg |
217 |
Q |
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| T |
45000324 |
caccatttgatgttattactttgattgttgtatcagaatctgccatggccccaacgaagcagtttcccatgttggagtttcaaacctatgttggtggatg |
45000423 |
T |
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| Q |
218 |
tttgttgtctttagactttcatgtcttatggtattggtattaaattaaagtatacttggagggaatagtggagcgggaaacttcttgagataaaaagtag |
317 |
Q |
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| T |
45000424 |
tttgttgtctttagactttcatgtcttatggtattggtagtaaattaaagtatacttggagggaatagtggagcgggaaacttcttgagataaaaagtag |
45000523 |
T |
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| Q |
318 |
aactttgttttatggtcggttagattcttgttgtgtgctttgacaaaagttaggctaaaaccaaattacaggaggaaaa |
396 |
Q |
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| T |
45000524 |
aactttgttttatggtcggttagattcttgttgtgtgctttgacaaaagttaggctagaaccaaattaaaggagaaaaa |
45000602 |
T |
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