View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1787_low_17 (Length: 444)
Name: NF1787_low_17
Description: NF1787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1787_low_17 |
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Alignment Details
Target: chr1 (Bit Score: 290; Significance: 1e-162; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 18 - 324
Target Start/End: Complemental strand, 47161039 - 47160737
Alignment:
| Q |
18 |
acttatggattactttccttccattagccacatttttcttttgtgatccaagaataaaaacaacgagccatcgaaatcgatattgttactgttgcatgtc |
117 |
Q |
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| T |
47161039 |
acttatggattactttccttccattagccacatttttcttttgtgatccaagaataaaaacaacgagccatcgaaatcgatattgttactgttgcatgtc |
47160940 |
T |
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| Q |
118 |
aagaatttgctagttccaatccaaaagctagaaagaaagatagtcctctttgcactcaatgtggtatttttggatacatcaaggacaaatgcttgaagtt |
217 |
Q |
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| T |
47160939 |
aagaatttgctagttccaatccaaaagctagaaagaaagatagtcctctttgcactcaatgtggtatttttggatacatcaaggacaaatgcttgaagtt |
47160840 |
T |
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| Q |
218 |
tcatggatatatatctttttggttcaagaagggaaaatcaggtccaccgagttatgtgaatgttgtatatactcaactatcttttccttatatgtctcaa |
317 |
Q |
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| T |
47160839 |
tcatgg----atatctttttggttcaagaagggaaaatcaggtccaccgagttatgtgaatgttgtatatactcaactatcttttccttatatgtctcaa |
47160744 |
T |
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| Q |
318 |
taaaaat |
324 |
Q |
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| T |
47160743 |
taaaaat |
47160737 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 321 - 434
Target Start/End: Complemental strand, 47160289 - 47160176
Alignment:
| Q |
321 |
aaatgaagtttatagacctttgaatttgtgaataatcaacaacgcaaccatatgaaaggtgaatatttaattatgattgtctcgtcacatacataaaaag |
420 |
Q |
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| T |
47160289 |
aaatgaagtttatagacctatgaatttgtgaataatcaacaacgcaaccatatgaaaggtgaatatttaattatgattgtctcgtcacatacataaaaag |
47160190 |
T |
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| Q |
421 |
tgatatacttgatg |
434 |
Q |
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| T |
47160189 |
tgatatacttgatg |
47160176 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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