View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1787_low_20 (Length: 424)
Name: NF1787_low_20
Description: NF1787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1787_low_20 |
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Alignment Details
Target: chr7 (Bit Score: 365; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 11 - 408
Target Start/End: Complemental strand, 24296423 - 24296026
Alignment:
| Q |
11 |
cagagacaaaacacaaggaaaacagaaaaaatgattgaataaatgtgccactctagtatctattttattgcaaagtggggacagatattgctacatacat |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24296423 |
cagagacaaaacacaaggaaaacagaaaaaatgattgaataaatgtgccactctagtatctattttattgcaaagtggggacagatattgctacatacat |
24296324 |
T |
|
| Q |
111 |
gccaaaatgaaaagcatgtgtacacattacaattaagcttagttaatgtgtgaaagaaatttacaaaacaactaaacgaggggcaatgattgtgaaaacg |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24296323 |
gccaaaatgaaaagcatgtgtacacattacaattaagcttagttaatgtgtgaaagaaatttacaaaacaactaaacgaggggcaatgattgtgaaaacg |
24296224 |
T |
|
| Q |
211 |
nnnnnnncagagtagtgaagcgaagaactcaaacagtgaaagacagcatgcgaacaagacgattacaacacggaacagtggcgactgttttctaatagct |
310 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24296223 |
aaaaaaacagagtagtgaagcgaagaactcaaacagtgaaagacagcatgcgaacaagacgattacaacacggaacagtggcgactgttttctaatagct |
24296124 |
T |
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| Q |
311 |
acctcactggttaagtaactagcaaacattaagcttcaaagtgaagagtcaatggtcttcattactttgctgtatgaagagaataagataagaaaaat |
408 |
Q |
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|||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
24296123 |
accttactgcttaagtaactagcaaacattaagcttcaaagtgaagagtcaatggtcttcattactttgctttatgaagagaataagataagaaaaat |
24296026 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 114 - 408
Target Start/End: Original strand, 19623221 - 19623515
Alignment:
| Q |
114 |
aaaatgaaaagcatgtgtacacattacaattaagcttagttaatgtgtgaaagaaatttacaaaacaactaaacgaggggcaatgattgtgaaaacgnnn |
213 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19623221 |
aaaatgaaaagcatgtgtacacattacaattaagcttagttaatgtgtgaaagaaatttacaaaacaactaaacgaggggcaatgattgtgaaaacgaaa |
19623320 |
T |
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| Q |
214 |
nnnncagagtagtgaagcgaagaactcaaacagtgaaagacagcatgcgaacaagacgattacaacacggaacagtggcgactgttttctaatagctacc |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19623321 |
aaaacagagtagtgaagcgaagaactcaaacagtgaaagacagcatgcgaacaagacgattacaacacggaacagtggcgactgttttctaatagctacc |
19623420 |
T |
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| Q |
314 |
tcactggttaagtaactagcaaacattaagcttcaaagtgaagagtcaatggtcttcattactttgctgtatgaagagaataagataagaaaaat |
408 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
19623421 |
tcactgcttaagtaactagcaaacattaagcttcaaagtgaagagtcaatggtcttcattactttgctatatgaagagaataagataagaaaaat |
19623515 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 11 - 115
Target Start/End: Original strand, 19622837 - 19622941
Alignment:
| Q |
11 |
cagagacaaaacacaaggaaaacagaaaaaatgattgaataaatgtgccactctagtatctattttattgcaaagtggggacagatattgctacatacat |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19622837 |
cagagacaaaacacaaggaaaacagaaaaaatgattgaataaatgtgccactctagtatctattttattgcaaagtggggacagatattgctacatacat |
19622936 |
T |
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| Q |
111 |
gccaa |
115 |
Q |
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||||| |
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| T |
19622937 |
gccaa |
19622941 |
T |
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