View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1787_low_21 (Length: 417)
Name: NF1787_low_21
Description: NF1787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1787_low_21 |
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Alignment Details
Target: chr4 (Bit Score: 369; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 9 - 400
Target Start/End: Complemental strand, 2724983 - 2724591
Alignment:
| Q |
9 |
gattatactcattttatacactaaagtgaattgttcactttggagaagtgagatccattaatagtgatgtgtaaatatgtttcgaagtcttggggagtgt |
108 |
Q |
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| T |
2724983 |
gattatactcattttatacactaaagtgaattgttcactttggagaagtgagatccattaatagtgatgtgtacatatgtttcgaagtcttggggagtgt |
2724884 |
T |
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| Q |
109 |
cgggagcaacaacaaggctaatgattgaacacgccaagaactttgacaccacatatccacgcaaaaccttatagcattgggaatataggtaaatccaaca |
208 |
Q |
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| T |
2724883 |
cgggagcaacaacacggctaatgattgaacacgccaagaactttgacaccacatatccacgcaaaaccttatagcattgggaatataggtaaatccaaca |
2724784 |
T |
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| Q |
209 |
tcgaactcattcatccgtagtcgatgtgagact-aatcactcacacgacaactaaacaacatacttaggtaaatcccaaaacaaagaaaaaggaaggaag |
307 |
Q |
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| T |
2724783 |
tcgaactcattcatccgtagtcgatgtgagactaaatcactcacacgacaactaaacaacatacttaggtaaatcccaaaacaaagaaaaaggaaggaag |
2724684 |
T |
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| Q |
308 |
ttaactgtaattacccatacaatgagaattccacgctgtctagcaatttccacagccttgatcacatttgggacaacatctttccctcctttt |
400 |
Q |
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||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2724683 |
ttaacagtaattacccaaacaatgagaattccacgctgtctagcaatttccacagccttgatcacatttgggacaacatctttccctcctttt |
2724591 |
T |
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