View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1787_low_22 (Length: 414)

Name: NF1787_low_22
Description: NF1787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1787_low_22
NF1787_low_22
[»] chr5 (3 HSPs)
chr5 (79-397)||(27584822-27585148)
chr5 (1-48)||(27584661-27584708)
chr5 (257-297)||(27452091-27452131)
[»] chr7 (4 HSPs)
chr7 (79-178)||(32033919-32034018)
chr7 (79-178)||(32025399-32025498)
chr7 (1-48)||(32025239-32025286)
chr7 (1-48)||(32033758-32033805)
[»] chr2 (6 HSPs)
chr2 (87-178)||(32229808-32229899)
chr2 (79-178)||(30425942-30426040)
chr2 (1-48)||(30426187-30426234)
chr2 (1-48)||(32230038-32230085)
chr2 (345-393)||(18493976-18494024)
chr2 (122-178)||(35553943-35554000)
[»] chr1 (3 HSPs)
chr1 (1-48)||(16140434-16140481)
chr1 (1-48)||(9057888-9057935)
chr1 (98-178)||(16139878-16139960)
[»] chr4 (2 HSPs)
chr4 (2-47)||(24977877-24977922)
chr4 (1-48)||(16595152-16595199)
[»] scaffold0321 (1 HSPs)
scaffold0321 (254-297)||(8852-8895)
[»] chr6 (1 HSPs)
chr6 (1-48)||(10502029-10502076)
[»] chr8 (1 HSPs)
chr8 (1-48)||(4922738-4922785)


Alignment Details
Target: chr5 (Bit Score: 205; Significance: 1e-112; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 79 - 397
Target Start/End: Original strand, 27584822 - 27585148
Alignment:
Q  79 tgagacttgttttagctgagtttggtcatagttggctagtttttgttgtaaaaaggttcaggcatctcctgatttgcaatttaattttcctagctttgat 178  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||    
T  27584822 tgagatttgttttagctgagtttggtcatagttggctagtttttgttgtaaaaagttccaggcatctcctgatttgcaatttaattttcctagctttgat 27584921  T
Q  179 ccnnnnnnnnn-cttctccnnnnnnnctgcattagcattaatagaaaacttgctatcaacgtgttatctcaaact-------aaaattagagagcaaact 270  Q
                |||||||       |||||||||||||||||||||||||||||||||||||||||||||||||       |||| |||||||||||||    
T  27584922 aaaaaaaaaaaacttctccaaaaaaactgcattagcattaatagaaaacttgctatcaacgtgttatctcaaacttaatgaaaaaactagagagcaaact 27585021  T
Q  271 aaaatgaagtatgtgagtctaattaatactagtccaccatatggatgtacaaaaagatattcaggtgtatattataacaaagagaatctgaccgattatt 370  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||| |||||||    
T  27585022 aaaatgaagtatgtgagtctaattaatactagttcaccatatggatgtataaaaagatattcgggtgtatattataacaaagagaatctgactgattatt 27585121  T
Q  371 taaaagttgtgataaagtgatttaaat 397  Q
    |||||||||||||||||||||||||||    
T  27585122 taaaagttgtgataaagtgatttaaat 27585148  T

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Target: chr5; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 27584661 - 27584708
Alignment:
Q  1 agtagcagctctacaagaggcaaaggctcggatggcatcacaagtagt 48  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||    
T  27584661 agtagcagctctacaagaggcaaatgctcggatggcatcacaagtagt 27584708  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 257 - 297
Target Start/End: Complemental strand, 27452131 - 27452091
Alignment:
Q  257 ttagagagcaaactaaaatgaagtatgtgagtctaattaat 297  Q
    ||||||||||||  |||||||||||||||||||||||||||    
T  27452131 ttagagagcaaaacaaaatgaagtatgtgagtctaattaat 27452091  T

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Target: chr7 (Bit Score: 84; Significance: 9e-40; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 79 - 178
Target Start/End: Original strand, 32033919 - 32034018
Alignment:
Q  79 tgagacttgttttagctgagtttggtcatagttggctagtttttgttgtaaaaaggttcaggcatctcctgatttgcaatttaattttcctagctttgat 178  Q
    ||||||||||||||||||| |||||||||||||| | ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  32033919 tgagacttgttttagctgaatttggtcatagttgaccagtttttgttgtaaaaaggttcaggcatctcctcatttgcaatttaattttcctagctttgat 32034018  T

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Target: chr7; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 79 - 178
Target Start/End: Original strand, 32025399 - 32025498
Alignment:
Q  79 tgagacttgttttagctgagtttggtcatagttggctagtttttgttgtaaaaaggttcaggcatctcctgatttgcaatttaattttcctagctttgat 178  Q
    |||||||| |||||||||| |||||||||||||||  ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  32025399 tgagacttattttagctgaatttggtcatagttggtcagtttttgttgtaaaaaggttcaggcatctcctcatttgcaatttaattttcctagctttgat 32025498  T

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Target: chr7; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 32025239 - 32025286
Alignment:
Q  1 agtagcagctctacaagaggcaaaggctcggatggcatcacaagtagt 48  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  32025239 agtagcagctctacaagaggcaaaggctcggatggcatcacaagtagt 32025286  T

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Target: chr7; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 32033758 - 32033805
Alignment:
Q  1 agtagcagctctacaagaggcaaaggctcggatggcatcacaagtagt 48  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  32033758 agtagcagctctacaagaggcaaaggctcggatggcatcacaagtagt 32033805  T

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Target: chr2 (Bit Score: 68; Significance: 3e-30; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 87 - 178
Target Start/End: Complemental strand, 32229899 - 32229808
Alignment:
Q  87 gttttagctgagtttggtcatagttggctagtttttgttgtaaaaaggttcaggcatctcctgatttgcaatttaattttcctagctttgat 178  Q
    ||||||||||||| |||||||||||||| ||||||| |||||||| ||||||||||||||||| |||||||||||||||| |||||||||||    
T  32229899 gttttagctgagtatggtcatagttggcaagttttttttgtaaaacggttcaggcatctcctgttttgcaatttaatttttctagctttgat 32229808  T

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Target: chr2; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 79 - 178
Target Start/End: Complemental strand, 30426040 - 30425942
Alignment:
Q  79 tgagacttgttttagctgagtttggtcatagttggctagtttttgttgtaaaaaggttcaggcatctcctgatttgcaatttaattttcctagctttgat 178  Q
    ||||| ||||||||| ||||| |||||||||||||| |||||||||||| ||| | ||||||||||| ||| ||| |||||||||||| |||||||||||    
T  30426040 tgagatttgttttagttgagtatggtcatagttggccagtttttgttgt-aaacgattcaggcatcttctgttttacaatttaatttttctagctttgat 30425942  T

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Target: chr2; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 30426234 - 30426187
Alignment:
Q  1 agtagcagctctacaagaggcaaaggctcggatggcatcacaagtagt 48  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||    
T  30426234 agtagcagctctgcaagaggcaaaggctcggatggcatcacaagtagt 30426187  T

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Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 32230085 - 32230038
Alignment:
Q  1 agtagcagctctacaagaggcaaaggctcggatggcatcacaagtagt 48  Q
    |||||||||| | ||||||||||||||||||||| |||||||||||||    
T  32230085 agtagcagctttgcaagaggcaaaggctcggatgacatcacaagtagt 32230038  T

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Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 345 - 393
Target Start/End: Complemental strand, 18494024 - 18493976
Alignment:
Q  345 taacaaagagaatctgaccgattatttaaaagttgtgataaagtgattt 393  Q
    |||||||| |||  |||||||||||||||||||| ||||||||||||||    
T  18494024 taacaaagggaacatgaccgattatttaaaagttatgataaagtgattt 18493976  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 122 - 178
Target Start/End: Complemental strand, 35554000 - 35553943
Alignment:
Q  122 tgttgtaaaaaggttcaggcatc-tcctgatttgcaatttaattttcctagctttgat 178  Q
    |||||||| ||||||||||| || |||||||||||| ||||||||| || ||||||||    
T  35554000 tgttgtaataaggttcaggcctcctcctgatttgcattttaatttttcttgctttgat 35553943  T

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Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 16140481 - 16140434
Alignment:
Q  1 agtagcagctctacaagaggcaaaggctcggatggcatcacaagtagt 48  Q
    |||||||||||| |||||||||||||||| ||||||||||||||||||    
T  16140481 agtagcagctctgcaagaggcaaaggctctgatggcatcacaagtagt 16140434  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 9057888 - 9057935
Alignment:
Q  1 agtagcagctctacaagaggcaaaggctcggatggcatcacaagtagt 48  Q
    |||||||||||  |||||||||||||||| |||||||| |||||||||    
T  9057888 agtagcagctccgcaagaggcaaaggctctgatggcattacaagtagt 9057935  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 98 - 178
Target Start/End: Complemental strand, 16139960 - 16139878
Alignment:
Q  98 gtttggtcatagttggctag-tttttgttgtaaaaaggttcaggcat-ctcctgatttgcaatttaattttcctagctttgat 178  Q
    |||||||||||||||||  | |||||||||||| ||| ||||||| | ||| || |||||||||||||||| ||| |||||||    
T  16139960 gtttggtcatagttggcctgctttttgttgtaataagattcaggcctactcttgttttgcaatttaatttttctaactttgat 16139878  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 2 - 47
Target Start/End: Complemental strand, 24977922 - 24977877
Alignment:
Q  2 gtagcagctctacaagaggcaaaggctcggatggcatcacaagtag 47  Q
    ||||||||||| |||||||||||||||| |||||||||||||||||    
T  24977922 gtagcagctctgcaagaggcaaaggctctgatggcatcacaagtag 24977877  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 16595199 - 16595152
Alignment:
Q  1 agtagcagctctacaagaggcaaaggctcggatggcatcacaagtagt 48  Q
    |||||||||||| ||||| ||||| |||| ||||||||||||||||||    
T  16595199 agtagcagctctgcaagaagcaaatgctctgatggcatcacaagtagt 16595152  T

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Target: scaffold0321 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0321
Description:

Target: scaffold0321; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 254 - 297
Target Start/End: Complemental strand, 8895 - 8852
Alignment:
Q  254 aaattagagagcaaactaaaatgaagtatgtgagtctaattaat 297  Q
    |||||||||||||||  |||||||||||||||||||||||||||    
T  8895 aaattagagagcaaaacaaaatgaagtatgtgagtctaattaat 8852  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 10502076 - 10502029
Alignment:
Q  1 agtagcagctctacaagaggcaaaggctcggatggcatcacaagtagt 48  Q
    |||||||||||| |||||||||||| ||| ||||||||||||||||||    
T  10502076 agtagcagctctgcaagaggcaaagactctgatggcatcacaagtagt 10502029  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 4922738 - 4922785
Alignment:
Q  1 agtagcagctctacaagaggcaaaggctcggatggcatcacaagtagt 48  Q
    |||||||||||| ||| |||||||||||| |||||||||| |||||||    
T  4922738 agtagcagctctgcaataggcaaaggctctgatggcatcataagtagt 4922785  T

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