View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1787_low_25 (Length: 393)
Name: NF1787_low_25
Description: NF1787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1787_low_25 |
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Alignment Details
Target: chr7 (Bit Score: 298; Significance: 1e-167; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 6 - 372
Target Start/End: Complemental strand, 16703259 - 16702887
Alignment:
| Q |
6 |
aaaaagttgttactagcatagacaaattaaatgtaattataaaaccaat------taacttctatgaatgcatacatttttgcagatcaacaattgaaca |
99 |
Q |
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| T |
16703259 |
aaaaagttgttactaacatagacaaattaaatgtaattaataaaccaatcttaattaacttctatgaatgcttatatttttgcagatcaacaattgaaca |
16703160 |
T |
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| Q |
100 |
atttgctatcatatcatccaaccttgcacaaactttagctcatatactagctgagaaaatggggcatgaatcaacttattttaaggagaattgcttgcca |
199 |
Q |
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| T |
16703159 |
atttgctatcatatcatccaaccttgcacaaactttagctcatattctagctgaaaaaatggggcatgaatcaacttattttaaggagaattgcttgccc |
16703060 |
T |
|
| Q |
200 |
aatacttgttatcttcggttgaaccgatatcctccatgtcccatagcttctgagattcatggtctaatgccacacactgatagtgacttcctcactatat |
299 |
Q |
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||||||||||||||||| |||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
16703059 |
aatacttgttatcttcgattgaacagatatcctccatgtcctatagcttctgagattcatggtctaatgccacacactgatagtgacttcctaactatat |
16702960 |
T |
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| Q |
300 |
tgtatcaagatcaagtaggaggattgcaattggtgaaagacaagaaatggattgcagttaaaccgaatcctag |
372 |
Q |
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| T |
16702959 |
tgtatcaagatcaagtaggaggattgcaattggtgaaagacaagaaatggattgcagttaaaccaaatcctag |
16702887 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 6 - 372
Target Start/End: Complemental strand, 17677495 - 17677123
Alignment:
| Q |
6 |
aaaaagttgttactagcatagacaaattaaatgtaattataaaaccaat------taacttctatgaatgcatacatttttgcagatcaacaattgaaca |
99 |
Q |
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||||||||||||||| ||||||||||||||||||||||| |||||||| |||||||||||||||| || ||||||||||||||||||||||||| |
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| T |
17677495 |
aaaaagttgttactaacatagacaaattaaatgtaattaataaaccaatcttaattaacttctatgaatgcttatatttttgcagatcaacaattgaaca |
17677396 |
T |
|
| Q |
100 |
atttgctatcatatcatccaaccttgcacaaactttagctcatatactagctgagaaaatggggcatgaatcaacttattttaaggagaattgcttgcca |
199 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17677395 |
atttgctatcatatcatccaaccttgcacaaactttagctcatattctagctgaaaaaatggggcatgaatcaacttattttaaggagaattgcttgccc |
17677296 |
T |
|
| Q |
200 |
aatacttgttatcttcggttgaaccgatatcctccatgtcccatagcttctgagattcatggtctaatgccacacactgatagtgacttcctcactatat |
299 |
Q |
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||||||||||||||||| |||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
17677295 |
aatacttgttatcttcgattgaacagatatcctccatgtcctatagcttctgagattcatggtctaatgccacacactgatagtgacttcctaactatat |
17677196 |
T |
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| Q |
300 |
tgtatcaagatcaagtaggaggattgcaattggtgaaagacaagaaatggattgcagttaaaccgaatcctag |
372 |
Q |
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| T |
17677195 |
tgtatcaagatcaagtaggaggattgcaattggtgaaagacaagaaatggattgcagttaaaccaaatcctag |
17677123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 110; Significance: 2e-55; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 78 - 339
Target Start/End: Complemental strand, 506357 - 506096
Alignment:
| Q |
78 |
tttgcagatcaacaattgaacaatttgctatcatatcatccaaccttgcacaaactttagctcatatactagctgagaaaatggggcatgaatcaactta |
177 |
Q |
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||||||| |||| ||||||||||||||||| || | |||||||||||||||| |||||| |||| ||||| |||||| |||| || ||||| ||| |
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| T |
506357 |
tttgcagttcaataattgaacaatttgctaccacagtttccaaccttgcacaaatattagctaatatcctagcagagaaattgggtcaccaatcatcttt |
506258 |
T |
|
| Q |
178 |
ttttaaggagaattgcttgccaaatacttgttatcttcggttgaaccgatatcctccatgtcccatagcttctgagattcatggtctaatgccacacact |
277 |
Q |
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|||||||||||||||||||| || || ||||||||| | |||||| ||||||||||||||||||| | || | ||||||||| ||||||||||| ||| |
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| T |
506257 |
ctttaaggagaattgcttgcccaacacatgttatcttagattgaacagatatcctccatgtcccattgattttaggattcatggcctaatgccacatact |
506158 |
T |
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| Q |
278 |
gatagtgacttcctcactatattgtatcaagatcaagtaggaggattgcaattggtgaaaga |
339 |
Q |
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|||||||||||||| || ||||| |||||||||||||| ||||| || |||||||||||||| |
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| T |
506157 |
gatagtgacttccttaccatattatatcaagatcaagttggaggtttacaattggtgaaaga |
506096 |
T |
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