View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1787_low_26 (Length: 392)

Name: NF1787_low_26
Description: NF1787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1787_low_26
NF1787_low_26
[»] scaffold0057 (2 HSPs)
scaffold0057 (23-392)||(36652-37022)
scaffold0057 (19-257)||(62846-63082)
[»] scaffold1206 (1 HSPs)
scaffold1206 (206-258)||(1957-2009)


Alignment Details
Target: scaffold0057 (Bit Score: 308; Significance: 1e-173; HSPs: 2)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 23 - 392
Target Start/End: Complemental strand, 37022 - 36652
Alignment:
Q  23 ggacatcatacctctgaagaattaatcaataccggcattcgcgaaagggatcatcttgctaaagaacaacacaatgaacttctaaaataataatgtgaac 122  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  37022 ggacatcatacctctgaagaattaatcaataccggcattcgcgaaagggatcatcttgctaaagaacaacacaatgaacttctaaaatagtaatgtgaac 36923  T
Q  123 gaatctacnnnnnnnnnnnnn-ggttgtttttcatgtttattttctttgtttgcatcaatcatcattaatgtaatatgtgtgtatcatggtttgcttccg 221  Q
    ||||||||              ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  36922 gaatctacaataaaataaagaaggttgtttttcatgtttattttctttgtttgtatcaatcatcattaatgtaatatgtgtgtatcatggtttgcttccg 36823  T
Q  222 ttccttgatttaataaaagtgtgtcttcccattgtttatttctccccaaatatgatgtttgtttatatctctaatgtgatagtgtgagaatcaattatta 321  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36822 ttccttgatttaataaaagtgtgtcttcccattgtttatttctccccaaatatgatgtttgtttatatctctaatgtgatagtgtgagaatcaattatta 36723  T
Q  322 gtcattatattaaaatagatggttagaacatgactgttagtttccattttttcggtttcgccttcgcatcc 392  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||    
T  36722 gtcattatattaaaatagatggttagaacgtgactgttagtttccatttttttggtttcgccttcgcatcc 36652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0057; HSP #2
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 19 - 257
Target Start/End: Complemental strand, 63082 - 62846
Alignment:
Q  19 ttcaggacatcatacctctgaagaattaatcaataccggcattcgcgaaagggatcatcttgctaaagaacaacacaatgaacttctaaaataataatgt 118  Q
    |||||||||| |||||||||||||||||||| ||  |  |||||||| |||||||||||||||| | |||||||||||||||||||||||||||||||||    
T  63082 ttcaggacataatacctctgaagaattaatcgatttcaacattcgcggaagggatcatcttgcttatgaacaacacaatgaacttctaaaataataatgt 62983  T
Q  119 gaacgaatctac-nnnnnnnnnnnnnggttgtttttcatgtttattttctttgtttgcatcaatcatcattaatgtaatatgtgtgtatcatggtttgct 217  Q
    ||||||||||||              ||||||| ||||||||||||||||||||||||||||   ||| |||||||||||||||||||||||||||||||    
T  62982 gaacgaatctacaataaaataaagaaggttgttgttcatgtttattttctttgtttgcatca---atcgttaatgtaatatgtgtgtatcatggtttgct 62886  T
Q  218 tccgttccttgatttaataaaagtgtgtcttcccattgtt 257  Q
    | ||||||||||| ||||| || |||| ||| ||||||||    
T  62885 ttcgttccttgatgtaatataaatgtggctttccattgtt 62846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1206 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold1206
Description:

Target: scaffold1206; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 206 - 258
Target Start/End: Original strand, 1957 - 2009
Alignment:
Q  206 tcatggtttgcttccgttccttgatttaataaaagtgtgtcttcccattgttt 258  Q
    |||||||||| || ||||||||||| ||||||||||||| ||| |||||||||    
T  1957 tcatggtttgttttcgttccttgatgtaataaaagtgtggctttccattgttt 2009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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