View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1787_low_29 (Length: 369)
Name: NF1787_low_29
Description: NF1787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1787_low_29 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 158 - 369
Target Start/End: Complemental strand, 43777752 - 43777541
Alignment:
| Q |
158 |
gcctaacataagctagctaatccctaaggaagaaggtcctgatagcgttacttctaagaaggttgagcagcccagttgggagagaagcatgaatgaggag |
257 |
Q |
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| T |
43777752 |
gcctaacataagctagctaatccctaaggaagaaggtcctgatagcgttacttctaagaaggttgagcagcccagttgggaaagaagcatgaatgaggag |
43777653 |
T |
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| Q |
258 |
atcaacatccgaagaagcttcaaactttgttaaaaaatcgacgcaccagttgccttttctgagagtgtgacaaattgtaacattacttgatgaaataact |
357 |
Q |
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| T |
43777652 |
atcaacatccgaagaagcttcaaactttgtcaaaaaatcgatgcaccagttcccttttctgagagtgtgacaaattatgacattacttgatgaaataact |
43777553 |
T |
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| Q |
358 |
ctttcatgtctt |
369 |
Q |
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|||||||||||| |
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| T |
43777552 |
ctttcatgtctt |
43777541 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 23 - 129
Target Start/End: Complemental strand, 43777887 - 43777781
Alignment:
| Q |
23 |
gaagtgccaaattacacgagtcatcaacgctaagatccagccagtattgacacgtcggtaaaaacgcgacactctttttggttacaaaggtgaatgagac |
122 |
Q |
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| T |
43777887 |
gaagtgccaaattacacgagtcatcaacgctaagatccagccagtattgacacgtcggtaaaaacgcgacactctttttggttacaaaggagaatgagac |
43777788 |
T |
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| Q |
123 |
aacaagg |
129 |
Q |
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| T |
43777787 |
aacaagg |
43777781 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 209 - 342
Target Start/End: Original strand, 36513623 - 36513755
Alignment:
| Q |
209 |
ttctaagaaggttgagcagcccagttgggagagaagcatgaatgaggagatcaacatccgaagaagcttcaaactttgttaaaaaatcgacgcaccagtt |
308 |
Q |
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| T |
36513623 |
ttctaataaagttgagcagcccagctaggggagaagcgtgaatgaggagatcaacatctgaagaaac-tcaaagttttgcgaagaatcggcgcaccggtt |
36513721 |
T |
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| Q |
309 |
gccttttctgagagtgtgacaaattgtaacatta |
342 |
Q |
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| T |
36513722 |
tccttctctgagagtgtgccaaattgtaacatta |
36513755 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 158 - 238
Target Start/End: Complemental strand, 5941989 - 5941909
Alignment:
| Q |
158 |
gcctaacataagctagctaatccctaaggaagaaggtcctgatagcgttacttctaagaaggttgagcagcccagttggga |
238 |
Q |
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| T |
5941989 |
gcctaacaaaacctagctaatccctaaggaagaaggttccattagcatcacttttaagaaggttgagcagctcagttggga |
5941909 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 160 - 275
Target Start/End: Complemental strand, 6313552 - 6313437
Alignment:
| Q |
160 |
ctaacataagctagctaatccctaaggaagaaggtcctgatagcgttacttctaagaaggttgagcagcccagttgggagagaagcatgaatgaggagat |
259 |
Q |
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|||||| || ||||||||| |||||| |||||||| | ||| || ||||||||||||||||| ||| ||| |||| | |||| ||||||| ||||| |
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| T |
6313552 |
ctaacagaacctagctaatacctaagaaagaaggttccattagtgtcgcttctaagaaggttgagtagctcagatgggggtaaagcgtgaatgacgagat |
6313453 |
T |
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| Q |
260 |
caacatccgaagaagc |
275 |
Q |
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| T |
6313452 |
caacatccgaagaagc |
6313437 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 202 - 296
Target Start/End: Complemental strand, 24305538 - 24305444
Alignment:
| Q |
202 |
gcgttacttctaagaaggttgagcagcccagttgggagagaagcatgaatgaggagatcaacatccgaagaagcttcaaactttgttaaaaaatc |
296 |
Q |
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| T |
24305538 |
gcgtcacttctaagaagattaagcagcccatcaagaagagaagcgtgaataaggagatcaatattcgaagaagctccaagctttgttaaaaaatc |
24305444 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 160 - 228
Target Start/End: Original strand, 3805604 - 3805672
Alignment:
| Q |
160 |
ctaacataagctagctaatccctaaggaagaaggtcctgatagcgttacttctaagaaggttgagcagc |
228 |
Q |
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| T |
3805604 |
ctaacataacctagctaatctcttaagaagaaggttccattagcgtcacttctaagaaggctgagcagc |
3805672 |
T |
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