View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1787_low_30 (Length: 365)
Name: NF1787_low_30
Description: NF1787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1787_low_30 |
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Alignment Details
Target: chr3 (Bit Score: 350; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 1 - 354
Target Start/End: Original strand, 49522003 - 49522356
Alignment:
| Q |
1 |
aacactacaaccttgtctctggtcgaaaaatgtacgctgaactcccaaaaatggcatgtgtattccttgagaccatagacattttctatcctcaatgaca |
100 |
Q |
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| T |
49522003 |
aacactacaaccttgtctctggtcgaaaaatgtacgctgaactcccaaaaatggcatgtgtattccttgagaccatagacattttctatcctcaatgaca |
49522102 |
T |
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| Q |
101 |
ctagagaattgcatgctgacacgaattttagaaccgcctggtacaggacgatgatcttcttcgtctaatatctcaacccatctgtcaattatcggtcctt |
200 |
Q |
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| T |
49522103 |
ctagagaattgcatgctgacacgaattttagaaccgcctggtacaggacgatgatcttcttcgtctaatatctcaacccatctgtcaattatcggtcctt |
49522202 |
T |
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| Q |
201 |
tgagaattttttcagaagggatgtaagctcttcctattagagttgcaccaatcggattatcatctttgacagtgaatacaatgtttgatatgtaatgagc |
300 |
Q |
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| T |
49522203 |
tgagaattttttcagaagggatgtaagctcttcctattagagttgcaccaatcggattatcatctttgacagtgaatacaatgtttgatatgtaatgagc |
49522302 |
T |
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| Q |
301 |
acaatagatttcaaaggtctcattccattttgggtttgagggttgattccctat |
354 |
Q |
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| T |
49522303 |
acaatagatttcaaaggtctcattccatttcgggtttgagggttgattccctat |
49522356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 224 - 285
Target Start/End: Original strand, 49511276 - 49511337
Alignment:
| Q |
224 |
taagctcttcctattagagttgcaccaatcggattatcatctttgacagtgaatacaatgtt |
285 |
Q |
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| T |
49511276 |
taagctcttccaattagagttgctccaatggggttatcttgtttgacagtgaatataatgtt |
49511337 |
T |
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