View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1787_low_33 (Length: 345)
Name: NF1787_low_33
Description: NF1787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1787_low_33 |
 | |
|
| [»] chr3 (2 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 286; Significance: 1e-160; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 14 - 345
Target Start/End: Original strand, 54842764 - 54843096
Alignment:
| Q |
14 |
gaagggctgggtcaagaacgtcaggcctatttgtagccataataattttaacctagaaccaacatccaagttaaacccgtgttcnnnnnnnnnta-tatc |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| |
|
|
| T |
54842764 |
gaagggctgggtcaagaacgtcaggcctatttgtagccataataattttaacctagaaccaacatccaagttaaacccgtgttcaaaaaaaaaaaatatc |
54842863 |
T |
|
| Q |
113 |
caagttaaaccgctattctatatagagaaaatatggaagcaatgtagacaaattcaaaaaatgtagtcaaatgtctaacatgtgcagatatcttaacgtt |
212 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54842864 |
caagttaaaccgctattctatatagagaaaatatggaagcaatgtagacaaattcaacaaatgtagtcaaatgtctaacatgtgcagatatcttaacgtt |
54842963 |
T |
|
| Q |
213 |
aagaacaataaacagaatgggaaataacctttccaagctgatcaaatccatccagctggttaagaagctccatgagagttctttgaatttcccgatcagc |
312 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
54842964 |
aagaacaataaacagaatgggaaataacctttccaagctgatcaaatccatccagctggttaagaagctccatgagagttctttgaatttcacgatcagc |
54843063 |
T |
|
| Q |
313 |
acttgtgccctcactgaaacgccgtccaccaat |
345 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
54843064 |
acttgtgccctcactgaaacgccgtccaccaat |
54843096 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 239 - 345
Target Start/End: Original strand, 52564845 - 52564951
Alignment:
| Q |
239 |
acctttccaagctgatcaaatccatccagctggttaagaagctccatgagagttctttgaatttcccgatcagcacttgtgccctcactgaaacgccgtc |
338 |
Q |
| |
|
||||||||||| |||||||| ||||| || || ||||| |||||||| | ||||| ||||| || ||||| |||||||| |||||||||||||| || | |
|
|
| T |
52564845 |
acctttccaagttgatcaaagccatcaagttgattaagcagctccattaacgttctctgaatctcacgatctgcacttgttccctcactgaaacggcgac |
52564944 |
T |
|
| Q |
339 |
caccaat |
345 |
Q |
| |
|
||||||| |
|
|
| T |
52564945 |
caccaat |
52564951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University