View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1787_low_36 (Length: 332)
Name: NF1787_low_36
Description: NF1787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1787_low_36 |
 | |
|
| [»] scaffold0272 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 234; Significance: 1e-129; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 17 - 317
Target Start/End: Complemental strand, 5038050 - 5037749
Alignment:
| Q |
17 |
cacagactgtattactaaaaatacgacgggttctcggcctccaaatactccaaacctcagcatgccaaatcaactggtaacctttacgaatcttcttatt |
116 |
Q |
| |
|
|||| ||||||||| |||||||||||||||||||| ||||||||||| ||||||||| ||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
5038050 |
cacaaactgtattattaaaaatacgacgggttctcagcctccaaatattccaaaccttggcatgccaaatcaaccagtaacctttacgaatcttcttatt |
5037951 |
T |
|
| Q |
117 |
tgactccctcccataccaagcttataataacctctttgttgtatcttcccccaaaaacggcacatatatttcaaatagtccaagattgtttataaatgaa |
216 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5037950 |
cgactcccccccataccaagcttataataacctctttgttgtatcttcccccaaaaacggcacatatatttcaaatagtccaagattgtttataaatgaa |
5037851 |
T |
|
| Q |
217 |
aac-ttaccatgaccgaaagttacatgagatatattggtcttcagaggcatttaaattgtcatctataaccgcgattatgtccgcaaaatgaaggttttt |
315 |
Q |
| |
|
||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||| | ||||||||| |
|
|
| T |
5037850 |
aactttaccatgaccaaaagttacatgagatatattggtcttcagaggcatttaaattgtcatctataaccacgattgtgtccgcaaagtaaaggttttt |
5037751 |
T |
|
| Q |
316 |
gt |
317 |
Q |
| |
|
|| |
|
|
| T |
5037750 |
gt |
5037749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 146 - 314
Target Start/End: Complemental strand, 5032728 - 5032557
Alignment:
| Q |
146 |
acctctttgttgtatcttcccccaaaaacggcacatatatttcaaatagtccaagattgtttataaatgaaaa-cttaccatgaccgaaagttacatgag |
244 |
Q |
| |
|
||||| |||||||||||||||||| ||||||| ||||||||||| ||||| ||||| |||||||||||||||| ||| |||||| | |||||||||| || |
|
|
| T |
5032728 |
acctcgttgttgtatcttcccccacaaacggcgcatatatttcatatagttcaagactgtttataaatgaaaaccttgccatgatcaaaagttacataag |
5032629 |
T |
|
| Q |
245 |
a--tatattggtcttcagaggcatttaaattgtcatctataaccgcgattatgtccgcaaaatgaaggtttt |
314 |
Q |
| |
|
| ||||||||||| |||| || |||||||||| |||||||||| |||| || ||||||||| |||||||| |
|
|
| T |
5032628 |
atgtatattggtctgcagaagcttttaaattgtggtctataaccgtgattgtggccgcaaaatcaaggtttt |
5032557 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 54 - 120
Target Start/End: Original strand, 34800193 - 34800259
Alignment:
| Q |
54 |
cctccaaatactccaaacctcagcatgccaaatcaactggtaacctttacgaatcttcttatttgac |
120 |
Q |
| |
|
||||||||||||||| ||| | ||||||||||||||||| || |||||||||| ||||||||||||| |
|
|
| T |
34800193 |
cctccaaatactccacaccgcggcatgccaaatcaactgataccctttacgaaccttcttatttgac |
34800259 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 47 - 118
Target Start/End: Complemental strand, 11888952 - 11888881
Alignment:
| Q |
47 |
ttctcggcctccaaatactccaaacctcagcatgccaaatcaactggtaacctttacgaatcttcttatttg |
118 |
Q |
| |
|
|||||| ||||||||||||||||||| | | ||||||||||||| |||| | ||||||| ||||||||||| |
|
|
| T |
11888952 |
ttctcgccctccaaatactccaaaccgcgggatgccaaatcaaccggtaccacttacgaaccttcttatttg |
11888881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0272 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: scaffold0272
Description:
Target: scaffold0272; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 54 - 119
Target Start/End: Complemental strand, 2526 - 2461
Alignment:
| Q |
54 |
cctccaaatactccaaacctcagcatgccaaatcaactggtaacctttacgaatcttcttatttga |
119 |
Q |
| |
|
||||||||||||||||||| | || |||||||||||| ||||||||||||||||||||| ||||| |
|
|
| T |
2526 |
cctccaaatactccaaaccgcggcgtgccaaatcaaccagtaacctttacgaatcttcttctttga |
2461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 54 - 123
Target Start/End: Complemental strand, 15858487 - 15858418
Alignment:
| Q |
54 |
cctccaaatactccaaacctcagcatgccaaatcaactggtaacctttacgaatcttcttatttgactcc |
123 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||| | | || || || | |||||||||||||||| |
|
|
| T |
15858487 |
cctccaaatactccaaaccgcagcatgccaaatcaacctgaacccgtttcggaccttcttatttgactcc |
15858418 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University