View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1787_low_4 (Length: 699)
Name: NF1787_low_4
Description: NF1787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1787_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 384; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 20 - 678
Target Start/End: Original strand, 34755463 - 34756114
Alignment:
| Q |
20 |
aatcaattaacattcgtagaaccggtaattaacaattattccaatcatcttctcagacgcgaaaaacaatnnnnnnnnt-catcaatgtatgtaaacggg |
118 |
Q |
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||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||| | | ||||||||||||| |||||| |
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| T |
34755463 |
aatcaattaacattcgtagaatcggtaattaacaattattacaatcatcttctcagacgcgaaaaacagtaaaaaaaattcatcaatgtatgtgaacggg |
34755562 |
T |
|
| Q |
119 |
ttaaaagctgcaatacttatttcttgatgtcagatgagtgtnnnnnnnn-tttgccatcattcttcaatgatttgagaaatactttcgtcnnnnnnnntt |
217 |
Q |
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| T |
34755563 |
ttaaaagctgcaat------ttcttgatgtcaaatgagtgtaaaaaaaaatttgccatcattcttcaatgatttgagaaatactttcgtcaaaaaaa-tt |
34755655 |
T |
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| Q |
218 |
gaacaattttatatacggatggaatagggtagaaaggttgtcaaggaatagtgaggtgcaagtgaaccaggcttggtatgtgatcagatatggaacaata |
317 |
Q |
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| T |
34755656 |
gaacaattttatatacggatggaatagggtagaaaggttgtcaaggaatagtgaggtgcaagtgaaccaggcttggtatgtgaccaggtaaggaacaata |
34755755 |
T |
|
| Q |
318 |
atttataattgttcagcagtgaacgacaattaattaccgtttagtagcaaacggtaattaattgttgcttggggtcattttggtaaatttaaggtgcttg |
417 |
Q |
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| T |
34755756 |
atttataattgttcagcagtgaacgacaattaattaccgtttaatagtaaacggtaattaattgctgcttggggtcattttggtaaatttagggtacttg |
34755855 |
T |
|
| Q |
418 |
agtgcagcccatggttgcctaaagaacaannnnnnnaccctaattttatgtgggaaactgtaccatgtatccctacatttataccttcacctcgatgaat |
517 |
Q |
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| T |
34755856 |
agtgtaacccatggttgcctaaagaacaattttcttaccctaattttatatgggaaactgtaccatgtacccctatatttatacctttaccccgataaac |
34755955 |
T |
|
| Q |
518 |
cattgaaaaatccagttttgtctctgctgtcacttgactttactatggatattgcatattcataaactttgaatgggtatatgcaaattcataaacttta |
617 |
Q |
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| T |
34755956 |
tattgaaaaatttagttttgtctctgctgtcacttgacttt-ccatgaatattgcatattcataaacttagaatgggtatctgcaaattcataaa-ttta |
34756053 |
T |
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| Q |
618 |
gaattggaggctttttgttttcttccgctatctgttcgtggtgacctccgattttggtcta |
678 |
Q |
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| T |
34756054 |
gaattggaggttttttgttttcttccgctatctgctcgtggtgacctccgattttggtcta |
34756114 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 108 - 145
Target Start/End: Original strand, 20522316 - 20522353
Alignment:
| Q |
108 |
atgtaaacgggttaaaagctgcaatacttatttcttga |
145 |
Q |
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| T |
20522316 |
atgtaaacgggttaaaagatgcaatacttgtttcttga |
20522353 |
T |
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