View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1787_low_43 (Length: 296)
Name: NF1787_low_43
Description: NF1787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1787_low_43 |
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Alignment Details
Target: chr1 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 14 - 293
Target Start/End: Original strand, 45000731 - 45001016
Alignment:
| Q |
14 |
aagtcgagtaaaaatacaatgaacgacaaaactcttttttaagagatttaatgccgttgcattctcgtggttgaatttgaattcaagatatctgattacg |
113 |
Q |
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| T |
45000731 |
aagtcgagtaagactataatggacgacaaaactcttttttaagagatttgatgccgttacattctcgtggttgaatttgaattcaagatatctgattacg |
45000830 |
T |
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| Q |
114 |
ctaaaagagtctgaatcatattgaatatgtccattttgtgcattgtttcaaaaatattgttttatatggacataggtagtatagtgaaagagtagaattt |
213 |
Q |
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| T |
45000831 |
ctaaaagagtctgaatcatattgaatatgtccattttatgcattgtttcaaaaatattgttttatatggatataggtagtatagtgaaagagtagaattt |
45000930 |
T |
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| Q |
214 |
tatagttgattcaagattgaagaaaacctgatggtgtcaatcaaatgtt------aataaaattagctaacaagtattatttaccc |
293 |
Q |
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| T |
45000931 |
tatagttgattcaaaattgaagaaaacctgatagtgtcaatcaaatgttaaaataaataaaattagctaacaagtactatttaccc |
45001016 |
T |
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Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 29 - 80
Target Start/End: Complemental strand, 2747140 - 2747088
Alignment:
| Q |
29 |
acaatgaacgacaaaactcttttt-taagagatttaatgccgttgcattctcg |
80 |
Q |
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|||||||| ||||||||||| ||| ||||||||||||| ||||||||||||| |
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| T |
2747140 |
acaatgaatgacaaaactctctttctaagagatttaatatcgttgcattctcg |
2747088 |
T |
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