View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1787_low_44 (Length: 294)
Name: NF1787_low_44
Description: NF1787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1787_low_44 |
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Alignment Details
Target: chr8 (Bit Score: 209; Significance: 1e-114; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 18 - 284
Target Start/End: Complemental strand, 22893644 - 22893381
Alignment:
| Q |
18 |
aaaactctattctactctctctgttttgggatcaagttgccaatgcaagtggggttaatgagcctattgtgaacataggggctaatattagggcaggacg |
117 |
Q |
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| T |
22893644 |
aaaactctattatgctctctctgttttgggatcaagttgccaatgcaagtggggttaatgagcttattgtgaacacaggggcaagtattagggcagaacg |
22893545 |
T |
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| Q |
118 |
agcaaaggaacttgatacagttgcaagttcaactagatcatcaataatgacacaagaagtattggttaaaaatgttgtaggaattgaagaagaaaatgat |
217 |
Q |
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| T |
22893544 |
agcaaaggaacttgatgcagttgcaagttcaactagagcatcaat---gacacaagaagtattggttaaaaatgttgtaggaattgaagaagaaaatgat |
22893448 |
T |
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| Q |
218 |
gataatttgttggaggacgattcataatattttggtgaagaagagctttatgatgatgttgatgatg |
284 |
Q |
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| T |
22893447 |
gataattggttggaggacgattcataatattttggtgaggaagagctttatgatgatgttgatgatg |
22893381 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 229 - 284
Target Start/End: Complemental strand, 20305232 - 20305177
Alignment:
| Q |
229 |
ggaggacgattcataatattttggtgaagaagagctttatgatgatgttgatgatg |
284 |
Q |
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| T |
20305232 |
ggaggacgatccggaatattttggtgaagaggagctttatgatgatgttgatgatg |
20305177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 229 - 284
Target Start/End: Complemental strand, 21091865 - 21091810
Alignment:
| Q |
229 |
ggaggacgattcataatattttggtgaagaagagctttatgatgatgttgatgatg |
284 |
Q |
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| T |
21091865 |
ggaggacgatccggaatattttggtgaagaggagctttatgatgatgttgatgatg |
21091810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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