View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1787_low_45 (Length: 294)

Name: NF1787_low_45
Description: NF1787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1787_low_45
NF1787_low_45
[»] chr8 (9 HSPs)
chr8 (121-233)||(22893144-22893256)
chr8 (121-233)||(20304939-20305052)
chr8 (121-233)||(21091572-21091685)
chr8 (178-233)||(22575859-22575914)
chr8 (1-46)||(22893335-22893380)
chr8 (1-45)||(20305132-20305176)
chr8 (1-45)||(21091765-21091809)
chr8 (200-233)||(14362460-14362493)
chr8 (200-233)||(14390799-14390832)
[»] chr4 (4 HSPs)
chr4 (121-233)||(19238283-19238385)
chr4 (178-233)||(49600581-49600636)
chr4 (166-233)||(54857318-54857385)
chr4 (178-224)||(54857276-54857322)
[»] chr5 (4 HSPs)
chr5 (152-233)||(1374965-1375047)
chr5 (152-233)||(32766591-32766673)
chr5 (178-224)||(1374938-1374984)
chr5 (178-215)||(32766564-32766601)
[»] chr7 (4 HSPs)
chr7 (152-233)||(24236881-24236963)
chr7 (152-213)||(37180494-37180556)
chr7 (178-224)||(37180467-37180513)
chr7 (178-224)||(24236944-24236990)
[»] chr2 (4 HSPs)
chr2 (152-229)||(17316070-17316148)
chr2 (178-233)||(7154518-7154573)
chr2 (178-233)||(17316028-17316083)
chr2 (180-224)||(17316129-17316173)
[»] chr1 (1 HSPs)
chr1 (178-233)||(44287968-44288023)
[»] chr3 (1 HSPs)
chr3 (178-233)||(41654418-41654473)


Alignment Details
Target: chr8 (Bit Score: 105; Significance: 2e-52; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 121 - 233
Target Start/End: Complemental strand, 22893256 - 22893144
Alignment:
Q  121 cataagattttggtggtttgtaactttaataatttatgaatgattatgagtaaatgttttcataagatttgggtgttttgtatgatttatgaatgtgtca 220  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  22893256 cataagattttggtggtttgtaactttaatgatttatgaatgattatgagtaaaagttttcataagatttgggtgttttgtatgatttatgaatgtgtca 22893157  T
Q  221 tgagatttgaatg 233  Q
    |||||||||||||    
T  22893156 tgagatttgaatg 22893144  T

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Target: chr8; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 121 - 233
Target Start/End: Complemental strand, 20305052 - 20304939
Alignment:
Q  121 cataagattttggtggtttgtaacttt-aataatttatgaatgattatgagtaaatgttttcataagatttgggtgttttgtatgatttatgaatgtgtc 219  Q
    ||||||||||||||||||||||||||| ||| ||||||||||||||||| ||||| | ||||||| |||||| |||||||||| ||||||||||||||||    
T  20305052 cataagattttggtggtttgtaactttgaatgatttatgaatgattatgggtaaaagctttcatatgatttgagtgttttgtacgatttatgaatgtgtc 20304953  T
Q  220 atgagatttgaatg 233  Q
    ||||||||||||||    
T  20304952 atgagatttgaatg 20304939  T

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Target: chr8; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 121 - 233
Target Start/End: Complemental strand, 21091685 - 21091572
Alignment:
Q  121 cataagattttggtggtttgtaacttt-aataatttatgaatgattatgagtaaatgttttcataagatttgggtgttttgtatgatttatgaatgtgtc 219  Q
    ||||||||||||||||||||||||||| ||| ||||||||||||||||| ||||| | ||||||| |||||| |||||||||| ||||||||||||||||    
T  21091685 cataagattttggtggtttgtaactttgaatgatttatgaatgattatgggtaaaagctttcatatgatttgagtgttttgtacgatttatgaatgtgtc 21091586  T
Q  220 atgagatttgaatg 233  Q
    ||||||||||||||    
T  21091585 atgagatttgaatg 21091572  T

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Target: chr8; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 178 - 233
Target Start/End: Complemental strand, 22575914 - 22575859
Alignment:
Q  178 tttcataagatttgggtgttttgtatgatttatgaatgtgtcatgagatttgaatg 233  Q
    ||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  22575914 tttcacaagatttgggtgttttgtatgatttatgaatgtttcatgagatttgaatg 22575859  T

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Target: chr8; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 22893380 - 22893335
Alignment:
Q  1 atcatcattgatttccaatgctatgttatgttggaattatcggttc 46  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  22893380 atcatcattgatttccaatgctatgttatgttggaattatcggttc 22893335  T

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Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 20305176 - 20305132
Alignment:
Q  1 atcatcattgatttccaatgctatgttatgttggaattatcggtt 45  Q
    |||||| ||||||||||||| ||||||||||||||||||||||||    
T  20305176 atcatcgttgatttccaatgttatgttatgttggaattatcggtt 20305132  T

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Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 21091809 - 21091765
Alignment:
Q  1 atcatcattgatttccaatgctatgttatgttggaattatcggtt 45  Q
    |||||| ||||||||||||| ||||||||||||||||||||||||    
T  21091809 atcatcgttgatttccaatgttatgttatgttggaattatcggtt 21091765  T

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Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 200 - 233
Target Start/End: Original strand, 14362460 - 14362493
Alignment:
Q  200 gtatgatttatgaatgtgtcatgagatttgaatg 233  Q
    ||||||||||||||||| ||||||||||||||||    
T  14362460 gtatgatttatgaatgtttcatgagatttgaatg 14362493  T

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Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 200 - 233
Target Start/End: Complemental strand, 14390832 - 14390799
Alignment:
Q  200 gtatgatttatgaatgtgtcatgagatttgaatg 233  Q
    ||||||||||||||||| ||||||||||||||||    
T  14390832 gtatgatttatgaatgtttcatgagatttgaatg 14390799  T

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Target: chr4 (Bit Score: 62; Significance: 8e-27; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 121 - 233
Target Start/End: Complemental strand, 19238385 - 19238283
Alignment:
Q  121 cataagattttggtggtttgtaactttaataatttatgaatgattatgagtaaatgttttcataagatttgggtgttttgtatgatttatgaatgtgtca 220  Q
    |||||||||||||||||||||||||||          ||||||||||||||||| | ||||||||||||| |||||||||||||||||||||| ||||||    
T  19238385 cataagattttggtggtttgtaacttt----------gaatgattatgagtaaaagctttcataagatttaggtgttttgtatgatttatgaacgtgtca 19238296  T
Q  221 tgagatttgaatg 233  Q
    |||||||||||||    
T  19238295 tgagatttgaatg 19238283  T

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Target: chr4; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 178 - 233
Target Start/End: Original strand, 49600581 - 49600636
Alignment:
Q  178 tttcataagatttgggtgttttgtatgatttatgaatgtgtcatgagatttgaatg 233  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  49600581 tttcataagatttgggtgttttgtatgatttatgaatgtttcatgagatttgaatg 49600636  T

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Target: chr4; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 166 - 233
Target Start/End: Original strand, 54857318 - 54857385
Alignment:
Q  166 atgagtaaatgttttcataagatttgggtgttttgtatgatttatgaatgtgtcatgagatttgaatg 233  Q
    ||||||||| | ||||| |||||||||||||||||||||||||||||||||  |||||||||||||||    
T  54857318 atgagtaaaagctttcaaaagatttgggtgttttgtatgatttatgaatgttccatgagatttgaatg 54857385  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 178 - 224
Target Start/End: Original strand, 54857276 - 54857322
Alignment:
Q  178 tttcataagatttgggtgttttgtatgatttatgaatgtgtcatgag 224  Q
    ||||||||||||||||||||||||||||| ||| ||||  |||||||    
T  54857276 tttcataagatttgggtgttttgtatgatatataaatgattcatgag 54857322  T

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Target: chr5 (Bit Score: 59; Significance: 5e-25; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 152 - 233
Target Start/End: Original strand, 1374965 - 1375047
Alignment:
Q  152 atttatgaatgatt-atgagtaaatgttttcataagatttgggtgttttgtatgatttatgaatgtgtcatgagatttgaatg 233  Q
    |||||||||||||| ||||||||| | |||||||||||||| |||||||||||||||||||||||| ||||||||||||||||    
T  1374965 atttatgaatgattcatgagtaaaagctttcataagatttgagtgttttgtatgatttatgaatgtttcatgagatttgaatg 1375047  T

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Target: chr5; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 152 - 233
Target Start/End: Original strand, 32766591 - 32766673
Alignment:
Q  152 atttatgaatgatt-atgagtaaatgttttcataagatttgggtgttttgtatgatttatgaatgtgtcatgagatttgaatg 233  Q
    |||||||||||||| |||| |||| | |||||||| |||||||||||||||||||||||||||||| ||||||||||||||||    
T  32766591 atttatgaatgattcatgactaaaagctttcataatatttgggtgttttgtatgatttatgaatgtttcatgagatttgaatg 32766673  T

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Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 178 - 224
Target Start/End: Original strand, 1374938 - 1374984
Alignment:
Q  178 tttcataagatttgggtgttttgtatgatttatgaatgtgtcatgag 224  Q
    ||||||||||||||||||||||||||||||||||||||  |||||||    
T  1374938 tttcataagatttgggtgttttgtatgatttatgaatgattcatgag 1374984  T

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Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 178 - 215
Target Start/End: Original strand, 32766564 - 32766601
Alignment:
Q  178 tttcataagatttgggtgttttgtatgatttatgaatg 215  Q
    ||||||||||||||||||||||||||||||||||||||    
T  32766564 tttcataagatttgggtgttttgtatgatttatgaatg 32766601  T

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Target: chr7 (Bit Score: 55; Significance: 1e-22; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 152 - 233
Target Start/End: Complemental strand, 24236963 - 24236881
Alignment:
Q  152 atttatgaatgatt-atgagtaaatgttttcataagatttgggtgttttgtatgatttatgaatgtgtcatgagatttgaatg 233  Q
    |||||||||||||| ||||||||| | ||||||| |||||||||||||| |||||||||||||||| ||||||||||||||||    
T  24236963 atttatgaatgattcatgagtaaaagctttcatacgatttgggtgttttatatgatttatgaatgtttcatgagatttgaatg 24236881  T

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Target: chr7; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 152 - 213
Target Start/End: Original strand, 37180494 - 37180556
Alignment:
Q  152 atttatgaatgatt-atgagtaaatgttttcataagatttgggtgttttgtatgatttatgaa 213  Q
    |||||||||||||| ||||||||| | ||||||||||||||||||||||||||||||||||||    
T  37180494 atttatgaatgattcatgagtaaaagctttcataagatttgggtgttttgtatgatttatgaa 37180556  T

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Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 178 - 224
Target Start/End: Original strand, 37180467 - 37180513
Alignment:
Q  178 tttcataagatttgggtgttttgtatgatttatgaatgtgtcatgag 224  Q
    ||||||||||||||||||||||||||||||||||||||  |||||||    
T  37180467 tttcataagatttgggtgttttgtatgatttatgaatgattcatgag 37180513  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 178 - 224
Target Start/End: Complemental strand, 24236990 - 24236944
Alignment:
Q  178 tttcataagatttgggtgttttgtatgatttatgaatgtgtcatgag 224  Q
    ||||| ||||||| ||||||||||||||||||||||||  |||||||    
T  24236990 tttcaaaagatttaggtgttttgtatgatttatgaatgattcatgag 24236944  T

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Target: chr2 (Bit Score: 55; Significance: 1e-22; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 152 - 229
Target Start/End: Complemental strand, 17316148 - 17316070
Alignment:
Q  152 atttatgaatgatt-atgagtaaatgttttcataagatttgggtgttttgtatgatttatgaatgtgtcatgagatttg 229  Q
    |||||||||||||| ||||||||| | |||||||||| |||||||||||||||||||||||||||| ||||||||||||    
T  17316148 atttatgaatgattcatgagtaaaagctttcataagagttgggtgttttgtatgatttatgaatgtttcatgagatttg 17316070  T

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Target: chr2; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 178 - 233
Target Start/End: Complemental strand, 7154573 - 7154518
Alignment:
Q  178 tttcataagatttgggtgttttgtatgatttatgaatgtgtcatgagatttgaatg 233  Q
    ||||||||||||||||||||||||||||||||||||||| | ||||||||||||||    
T  7154573 tttcataagatttgggtgttttgtatgatttatgaatgttttatgagatttgaatg 7154518  T

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Target: chr2; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 178 - 233
Target Start/End: Complemental strand, 17316083 - 17316028
Alignment:
Q  178 tttcataagatttgggtgttttgtatgatttatgaatgtgtcatgagatttgaatg 233  Q
    |||||| |||||||||||||||||||||||||||||||| ||||||||||||||||    
T  17316083 tttcatgagatttgggtgttttgtatgatttatgaatgtttcatgagatttgaatg 17316028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 180 - 224
Target Start/End: Complemental strand, 17316173 - 17316129
Alignment:
Q  180 tcataagatttgggtgttttgtatgatttatgaatgtgtcatgag 224  Q
    ||||||||||||||||||||||||||||||||||||  |||||||    
T  17316173 tcataagatttgggtgttttgtatgatttatgaatgattcatgag 17316129  T

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Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 178 - 233
Target Start/End: Original strand, 44287968 - 44288023
Alignment:
Q  178 tttcataagatttgggtgttttgtatgatttatgaatgtgtcatgagatttgaatg 233  Q
    |||||||||||||||||||||||||||||| |||||||| ||||||||||||||||    
T  44287968 tttcataagatttgggtgttttgtatgattcatgaatgtttcatgagatttgaatg 44288023  T

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Target: chr3 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 178 - 233
Target Start/End: Original strand, 41654418 - 41654473
Alignment:
Q  178 tttcataagatttgggtgttttgtatgatttatgaatgtgtcatgagatttgaatg 233  Q
    ||||| |||||||||||||||||||| |||||||||||| ||||||||||||||||    
T  41654418 tttcacaagatttgggtgttttgtattatttatgaatgtttcatgagatttgaatg 41654473  T

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