View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1787_low_47 (Length: 290)
Name: NF1787_low_47
Description: NF1787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1787_low_47 |
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Alignment Details
Target: chr1 (Bit Score: 93; Significance: 3e-45; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 142 - 243
Target Start/End: Complemental strand, 34367963 - 34367860
Alignment:
| Q |
142 |
cagccaatatgtgatgcttataatatat--tgataagaaatattaccactataatattacagaaaatacttcccacccaacataaacaatttagagcaaa |
239 |
Q |
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| T |
34367963 |
cagccaatatgtgatgcttataatatatattgataagaaatattaccactataatattacagaaaatacttcccacccaacataaacaatttagagcaaa |
34367864 |
T |
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| Q |
240 |
caat |
243 |
Q |
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|||| |
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| T |
34367863 |
caat |
34367860 |
T |
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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 34368103 - 34368070
Alignment:
| Q |
1 |
ttaaattgtgtcaattaatatgaaacgtgaggag |
34 |
Q |
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||||| |||||||||||||||||||||||||||| |
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| T |
34368103 |
ttaaactgtgtcaattaatatgaaacgtgaggag |
34368070 |
T |
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