View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1787_low_49 (Length: 273)
Name: NF1787_low_49
Description: NF1787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1787_low_49 |
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Alignment Details
Target: chr8 (Bit Score: 196; Significance: 1e-107; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 18 - 265
Target Start/End: Original strand, 12185345 - 12185592
Alignment:
| Q |
18 |
aattattgactccatctctttacataagctgcaacagaactttataacatgaggtctccgtgaaatccaatatgcaagagtttttcaagtacatccctgt |
117 |
Q |
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| T |
12185345 |
aattattgcctgcatgtctttacataagctgcaacagaattttataacatgaggtctccgccaaatccaatatgcaagagttcttcaagtacacccctgt |
12185444 |
T |
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| Q |
118 |
tcaaattttcaaacataatttcaagttagtgatttcaattattaatgtgttattgaaaaatttgaaaaagtgagaagcaattaatccaccatctattttt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| |||||||||| |
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| T |
12185445 |
tcaaattttcaaacataatttcaagttagtgatttcaattattaatgtgttattgaaaaatttgaaaaagtgcgaagtaattaatccactatctattttt |
12185544 |
T |
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| Q |
218 |
aataacaagcaattttccctaacataccttaagtcttctgtctctgct |
265 |
Q |
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| T |
12185545 |
aataacaagcaattttccctaagataccttaagtcttctgtttctgct |
12185592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 18 - 265
Target Start/End: Original strand, 12429773 - 12430020
Alignment:
| Q |
18 |
aattattgactccatctctttacataagctgcaacagaactttataacatgaggtctccgtgaaatccaatatgcaagagtttttcaagtacatccctgt |
117 |
Q |
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| T |
12429773 |
aattattgcctgcatgtctttacataagctgcaacagaattttataacatgaggtctccgccaaatccaatatgcaagagttcttcaagtacacccctgt |
12429872 |
T |
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| Q |
118 |
tcaaattttcaaacataatttcaagttagtgatttcaattattaatgtgttattgaaaaatttgaaaaagtgagaagcaattaatccaccatctattttt |
217 |
Q |
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| T |
12429873 |
tcaaattttcaaacataatttcaagttagtgatttcaattattaatgtgttattgaaaaatttgaaaaagtgcgaagtaattaatccactatctattttt |
12429972 |
T |
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| Q |
218 |
aataacaagcaattttccctaacataccttaagtcttctgtctctgct |
265 |
Q |
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| T |
12429973 |
aataacaagcaattttccctaagataccttaagtcttctgtttctgct |
12430020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 18 - 154
Target Start/End: Original strand, 12173881 - 12174017
Alignment:
| Q |
18 |
aattattgactccatctctttacataagctgcaacagaactttataacatgaggtctccgtgaaatccaatatgcaagagtttttcaagtacatccctgt |
117 |
Q |
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|
||||||||||| ||| ||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| |||||||||| ||||| |
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| T |
12173881 |
aattattgactgcatgtctttacataagctgcaacagaattttataacatgaggtctccgccaaatccaatatgcaagagttcttcaagtacactcctgt |
12173980 |
T |
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| Q |
118 |
tcaaattttcaaacataatttcaagttagtgatttca |
154 |
Q |
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| T |
12173981 |
tcaaattttcaaacataattttaacttagtgatttca |
12174017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 18 - 154
Target Start/End: Original strand, 12418309 - 12418445
Alignment:
| Q |
18 |
aattattgactccatctctttacataagctgcaacagaactttataacatgaggtctccgtgaaatccaatatgcaagagtttttcaagtacatccctgt |
117 |
Q |
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||||||||||| ||| ||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| |||||||||| ||||| |
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| T |
12418309 |
aattattgactgcatgtctttacataagctgcaacagaattttataacatgaggtctccgccaaatccaatatgcaagagttcttcaagtacactcctgt |
12418408 |
T |
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| Q |
118 |
tcaaattttcaaacataatttcaagttagtgatttca |
154 |
Q |
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||||||||||||||||||||| || |||||||||||| |
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| T |
12418409 |
tcaaattttcaaacataattttaacttagtgatttca |
12418445 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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