View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1787_low_53 (Length: 259)
Name: NF1787_low_53
Description: NF1787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1787_low_53 |
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Alignment Details
Target: chr3 (Bit Score: 186; Significance: 1e-101; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 25 - 251
Target Start/End: Complemental strand, 384635 - 384409
Alignment:
| Q |
25 |
ttgctaaccctaatgtgtcttttcctcttgttatcagagctcgtatttttgttacggttagttcttcataactcctcaattannnnnnnactttgttgtt |
124 |
Q |
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| T |
384635 |
ttgctaaccctaatgtgtcttttcctcttgttatcagagctcgtatttttgttacagttagttcttcataactcctcaactatttttttactttgttgtt |
384536 |
T |
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| Q |
125 |
gttgttgatgtttatattcaaattatcattaggtagttgtgaatcgtgtcgggttggagatcattagtcagaatgttggaggtgacttcgaaccgttgtt |
224 |
Q |
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| T |
384535 |
gttgttgatgtttatattcaaattatcattaggtagttgtgaatcgtgtcggattggagatcattagtcggaatgttggaggtgacttcgaaccgttgtt |
384436 |
T |
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| Q |
225 |
cctatgatcaatagcttccttcatctc |
251 |
Q |
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| T |
384435 |
cctatgatcaatagcttccttcttctc |
384409 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 29 - 90
Target Start/End: Complemental strand, 390008 - 389947
Alignment:
| Q |
29 |
taaccctaatgtgtcttttcctcttgttatcagagctcgtatttttgttacggttagttctt |
90 |
Q |
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| T |
390008 |
taaccctaatacttctcttcctcttgttattagagctcgtgttttcattacggttagttctt |
389947 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 117 - 166
Target Start/End: Complemental strand, 389908 - 389857
Alignment:
| Q |
117 |
ttgttgttgttgttgatgtttatattcaaatt--atcattaggtagttgtga |
166 |
Q |
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| T |
389908 |
ttgttgttgttgttgttgtttatgttcaaattaaatcattaggtagtcgtga |
389857 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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