View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1787_low_58 (Length: 246)
Name: NF1787_low_58
Description: NF1787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1787_low_58 |
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Alignment Details
Target: chr3 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 1154590 - 1154817
Alignment:
| Q |
1 |
atgaaatcaaatcaaagattccatgctaggaaccattgctattgtgataagaaaagatgtttagtaagtactatcaatcttcatgccatcatgatccttt |
100 |
Q |
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| T |
1154590 |
atgaaatcaaatcaaagattccatgctaggaaccattgctattgtgataagaaaagatgtttagtaagtactatcaatcttcatgccatcatgatccttt |
1154689 |
T |
|
| Q |
101 |
cgaagcttctgtccaagagcagttggatagtggacagaattgcttttgtccattccaaatctttccaatacttccatcacatatcttttttgactaatgg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
1154690 |
cgaagcttctgtccaagagcagttggatagtggacagaattgcttttgtccattccaaatctctccaatacttccatcacatatcttttttgactaatga |
1154789 |
T |
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| Q |
201 |
aaaatgccatcagtattttgaattactt |
228 |
Q |
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|||||||||||||| ||||||||||||| |
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| T |
1154790 |
aaaatgccatcagtcttttgaattactt |
1154817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 2 - 55
Target Start/End: Complemental strand, 23935899 - 23935846
Alignment:
| Q |
2 |
tgaaatcaaatcaaagattccatgctaggaaccattgctattgtgataagaaaa |
55 |
Q |
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|||||| ||||||||| ||||||||||||||| ||||||| ||||||||||||| |
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| T |
23935899 |
tgaaataaaatcaaagtttccatgctaggaacaattgctactgtgataagaaaa |
23935846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 4 - 55
Target Start/End: Original strand, 35386931 - 35386982
Alignment:
| Q |
4 |
aaatcaaatcaaagattccatgctaggaaccattgctattgtgataagaaaa |
55 |
Q |
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|||||||||||||| |||||||||||||||| ||||| ||||||||||||| |
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| T |
35386931 |
aaatcaaatcaaagtttccatgctaggaaccgctgctactgtgataagaaaa |
35386982 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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