View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1787_low_66 (Length: 211)
Name: NF1787_low_66
Description: NF1787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1787_low_66 |
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Alignment Details
Target: chr2 (Bit Score: 175; Significance: 2e-94; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 19 - 201
Target Start/End: Complemental strand, 14736175 - 14735993
Alignment:
| Q |
19 |
ctcttaagggagggagtgtaatttaatcttttatttttatcatattttaattaatcttgttatccaatctagcaattctgatgcatagaggaatgaagga |
118 |
Q |
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| T |
14736175 |
ctcttaagggagggagtgtaatttaatcttttatttttatcatattttaattaatcttgttatccaatctagcaattctgatgcatagaggaatgaagga |
14736076 |
T |
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| Q |
119 |
acatgttgtttccttcttatacgatatctcatttgtttgttttttactaatttatgtcacgggattatctttgtcaagaataa |
201 |
Q |
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| T |
14736075 |
acatcttgtttccttcttatacgatatctcatttgtttgttttttactaatttatgtcaagggattatctttgtcaagaataa |
14735993 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 97; E-Value: 7e-48
Query Start/End: Original strand, 30 - 162
Target Start/End: Complemental strand, 14742535 - 14742403
Alignment:
| Q |
30 |
gggagtgtaatttaatcttttatttttatcatattttaattaatcttgttatccaatctagcaattctgatgcatagaggaatgaaggaacatgttgttt |
129 |
Q |
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| T |
14742535 |
gggagtgtaatttactctttaattgttatcatattttaattaatcttgttatccaatctaacaattatgatgcatataggaatgaaggaacatcctgttt |
14742436 |
T |
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| Q |
130 |
ccttcttatacgatatctcatttgtttgttttt |
162 |
Q |
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| T |
14742435 |
ccttcttatacaatatctcatttgtttgttttt |
14742403 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 70 - 159
Target Start/End: Original strand, 14997031 - 14997118
Alignment:
| Q |
70 |
taatcttgttatccaatctagcaattctgatgcatagaggaatgaaggaacatgttgtttccttcttatacgatatctcatttgtttgtt |
159 |
Q |
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| T |
14997031 |
taatcttgttatccaatctagcatttgtgatccaaagatgaatgaatcaacatcatttttccttcttgta--atatctcatttgcttgtt |
14997118 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 71 - 115
Target Start/End: Original strand, 29464958 - 29465002
Alignment:
| Q |
71 |
aatcttgttatccaatctagcaattctgatgcatagaggaatgaa |
115 |
Q |
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| T |
29464958 |
aatcttgttatccaatctagcatttctgatccaaaggggaatgaa |
29465002 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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