View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17880_high_1 (Length: 838)

Name: NF17880_high_1
Description: NF17880
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17880_high_1
NF17880_high_1
[»] chr2 (7 HSPs)
chr2 (152-377)||(44911826-44912049)
chr2 (1-115)||(44911714-44911828)
chr2 (1-125)||(3768993-3769117)
chr2 (688-823)||(44912046-44912184)
chr2 (667-806)||(44918034-44918173)
chr2 (124-164)||(3768575-3768615)
chr2 (369-407)||(23244852-23244890)
[»] chr4 (3 HSPs)
chr4 (124-299)||(6354454-6354636)
chr4 (1-125)||(6353950-6354074)
chr4 (298-403)||(6354668-6354772)
[»] chr1 (3 HSPs)
chr1 (1-125)||(3928600-3928724)
chr1 (204-296)||(3928981-3929073)
chr1 (311-407)||(3929116-3929211)
[»] chr6 (1 HSPs)
chr6 (1-51)||(30372845-30372895)
[»] chr5 (1 HSPs)
chr5 (369-407)||(6437366-6437404)


Alignment Details
Target: chr2 (Bit Score: 187; Significance: 1e-101; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 152 - 377
Target Start/End: Original strand, 44911826 - 44912049
Alignment:
Q  152 tggttgtttctttgatagtgggattgtgtaaagagtggcaacaaacaatcatatggtacattataaaaataaaactattatcccaacaaaatagtcttgc 251  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||  ||||||||||||||||||||||||||| |||||||||||| |||||    
T  44911826 tggttgtttctttgatagtgggattgtgtaaagagcggcaacaaacaatcat--ggtacattataaaaataaaactattataccaacaaaatagccttgc 44911923  T
Q  252 caaagaatttggaaactcaaatttgaaacaagaaaagaaattgcagcaaagggatgaattgaaaggctgaaaagattatgctgtggttataaaagttaga 351  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||| |||||||||||||||||||||    
T  44911924 caaagaatttggaaactcaaatttgaaacaagaaaagaaattgcagcaaagggatgaaacgaaaggctgaaaagattacgctgtggttataaaagttaga 44912023  T
Q  352 gatcatagtaaatatttgatccaatg 377  Q
    |||||||||||| |||||||||||||    
T  44912024 gatcatagtaaagatttgatccaatg 44912049  T

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Target: chr2; HSP #2
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 1 - 115
Target Start/End: Original strand, 44911714 - 44911828
Alignment:
Q  1 tttaccgttcatgccattcatctatcttccatcttctcgtttctattaattctcattaggttcatcgtcatcacaacaacaccaacccctcttgtttcat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  44911714 tttaccgttcatgccattcatctatcttccatcttctcgtttctattaattttcattaggttcatcgtcatcacaacaacaccaacccctcttgtttcat 44911813  T
Q  101 accttcttcccatgg 115  Q
    |||||||||||||||    
T  44911814 accttcttcccatgg 44911828  T

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Target: chr2; HSP #3
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 1 - 125
Target Start/End: Complemental strand, 3769117 - 3768993
Alignment:
Q  1 tttaccgttcatgccattcatctatcttccatcttctcgtttctattaattctcattaggttcatcgtcatcacaacaacaccaacccctcttgtttcat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| ||||||||||||||||||||||||    
T  3769117 tttaccgttcatgccattcatctatcttccatcttctcgtttctattaattttcatttggttcatcgtcatcacagcaacaccaacccctcttgtttcat 3769018  T
Q  101 accttcttcccatggattgtctcaa 125  Q
    |||||||||||||||||||| ||||    
T  3769017 accttcttcccatggattgtgtcaa 3768993  T

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Target: chr2; HSP #4
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 688 - 823
Target Start/End: Original strand, 44912046 - 44912184
Alignment:
Q  688 aatgttcttctcatataagttatttctacataaaattggagacagttnnnnnnn---ggcaaattaaaagagaatgaactttgaatattaaaattgataa 784  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||          |||||||||||||||||||||||||||||||||||||||||||    
T  44912046 aatgttcttctcatataagttatttctacataaaattggagacaattaaaaaaaaaaggcaaattaaaagagaatgaactttgaatattaaaattgataa 44912145  T
Q  785 gccaactgtattcctatttttcttagcaaataacgaagt 823  Q
    ||||||||||||||||||||||| |||||||||||||||    
T  44912146 gccaactgtattcctatttttctaagcaaataacgaagt 44912184  T

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Target: chr2; HSP #5
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 667 - 806
Target Start/End: Original strand, 44918034 - 44918173
Alignment:
Q  667 atatgttgcttattcaattataatgttcttctcatataagttatttctacataaaattggagacagttnnnnnnn-ggcaaattaaaagagaatgaactt 765  Q
    |||||||||| |||||||||| ||||||| ||||||| || |||||| ||||||||||||||| ||||        ||||||||||||||||||||||||    
T  44918034 atatgttgctcattcaattatcatgttctcctcatatgagatatttcaacataaaattggagatagttcaataaaaggcaaattaaaagagaatgaactt 44918133  T
Q  766 tgaatattaaaattgataagccaactgtattcctatttttc 806  Q
    |||||| | ||||||||||| ||||  ||||||||||||||    
T  44918134 tgaata-tgaaattgataaggcaacaatattcctatttttc 44918173  T

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Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 124 - 164
Target Start/End: Complemental strand, 3768615 - 3768575
Alignment:
Q  124 aacaagcatttgcaacaaaactctttgctggttgtttcttt 164  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  3768615 aacaagcatttgcaacaaaactctttgctggttgtttcttt 3768575  T

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Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 369 - 407
Target Start/End: Complemental strand, 23244890 - 23244852
Alignment:
Q  369 gatccaatggtcaccatttgatcctctcatcctctcatt 407  Q
    ||||||||||||||||||||||| ||||| |||||||||    
T  23244890 gatccaatggtcaccatttgatcatctcaccctctcatt 23244852  T

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Target: chr4 (Bit Score: 123; Significance: 1e-62; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 123; E-Value: 1e-62
Query Start/End: Original strand, 124 - 299
Target Start/End: Original strand, 6354454 - 6354636
Alignment:
Q  124 aacaagcatttgcaacaaaactctttgctggttgtttcttt-gatagtggg-attgtgtaaagagtggcaacaaacaatcat-----atggtacattata 216  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||| ||||||||||||||||     ||  || ||||||    
T  6354454 aacaagcatttgcaacaaaactctttgctggttgtttcttttgatagtggggattgtgtaaagagcggcaacaaacaatcatggtacattataaattata 6354553  T
Q  217 aaaataaaactattatcccaacaaaatagtcttgccaaagaatttggaaactcaaatttgaaacaagaaaagaaattgcagca 299  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  6354554 aaaataaaattattatcccaacaaaatagtcttgccaaagaatttggaaagtcaaatttgaaacaagaaaagaaattgcagca 6354636  T

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Target: chr4; HSP #2
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 1 - 125
Target Start/End: Original strand, 6353950 - 6354074
Alignment:
Q  1 tttaccgttcatgccattcatctatcttccatcttctcgtttctattaattctcattaggttcatcgtcatcacaacaacaccaacccctcttgtttcat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| |||||||||||    
T  6353950 tttaccgttcatgccattcatctatcttccatcttctcgtttctattaattttcattcggttcatcgtcatcacaacaacaccaacccatcttgtttcat 6354049  T
Q  101 accttcttcccatggattgtctcaa 125  Q
    |||||||||||||||||||| ||||    
T  6354050 accttcttcccatggattgtgtcaa 6354074  T

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Target: chr4; HSP #3
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 298 - 403
Target Start/End: Original strand, 6354668 - 6354772
Alignment:
Q  298 caaagggatgaattgaaaggctgaaaagattatgctgtggttataaaagttagagatcatagtaaatatttgatccaatggtcaccatttgatcctctca 397  Q
    ||||||||||||  ||||||||||||| ||||   ||||||||||||||||||||||||||||||| | |||||||||||||||||||||||| ||||||    
T  6354668 caaagggatgaaacgaaaggctgaaaatattacaatgtggttataaaagttagagatcatagtaaaga-ttgatccaatggtcaccatttgattctctca 6354766  T
Q  398 tcctct 403  Q
    ||||||    
T  6354767 tcctct 6354772  T

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Target: chr1 (Bit Score: 105; Significance: 5e-52; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 105; E-Value: 5e-52
Query Start/End: Original strand, 1 - 125
Target Start/End: Original strand, 3928600 - 3928724
Alignment:
Q  1 tttaccgttcatgccattcatctatcttccatcttctcgtttctattaattctcattaggttcatcgtcatcacaacaacaccaacccctcttgtttcat 100  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||    
T  3928600 tttaccgttcatgtcattcatctatcttccatcttctcgtttctattaattttcattcggttcatcgtcatcacaacaacaccaacccctcttgtttcat 3928699  T
Q  101 accttcttcccatggattgtctcaa 125  Q
    ||||||||||||| |||||| ||||    
T  3928700 accttcttcccatagattgtgtcaa 3928724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 85; E-Value: 5e-40
Query Start/End: Original strand, 204 - 296
Target Start/End: Original strand, 3928981 - 3929073
Alignment:
Q  204 atggtacattataaaaataaaactattatcccaacaaaatagtcttgccaaagaatttggaaactcaaatttgaaacaagaaaagaaattgca 296  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||    
T  3928981 atggtacattataaaaataaaactattatcccaacaaaatagccttgccaaagaatttggaaagtcaaatttgaaacaagaaaagaaattgca 3929073  T

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Target: chr1; HSP #3
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 311 - 407
Target Start/End: Original strand, 3929116 - 3929211
Alignment:
Q  311 tgaaaggctgaaaagattatgctgtggttataaaagttagagatcatagtaaatatttgatccaatggtcaccatttgatcctctcatcctctcatt 407  Q
    ||||||| ||||||||||| ||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||    
T  3929116 tgaaagggtgaaaagattacgctgtggttataaaagttagagatcatagtaaaga-ttgatccaatggtcaccatttgatcctctcatcctctcatt 3929211  T

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Target: chr6 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 30372895 - 30372845
Alignment:
Q  1 tttaccgttcatgccattcatctatcttccatcttctcgtttctattaatt 51  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  30372895 tttaccgttcatgtcattcatctatcttccatcttctcgtttctattaatt 30372845  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 369 - 407
Target Start/End: Original strand, 6437366 - 6437404
Alignment:
Q  369 gatccaatggtcaccatttgatcctctcatcctctcatt 407  Q
    ||||||||||||||||||||||| ||||| |||||||||    
T  6437366 gatccaatggtcaccatttgatcatctcaccctctcatt 6437404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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