View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17880_low_1 (Length: 838)
Name: NF17880_low_1
Description: NF17880
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17880_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 187; Significance: 1e-101; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 152 - 377
Target Start/End: Original strand, 44911826 - 44912049
Alignment:
| Q |
152 |
tggttgtttctttgatagtgggattgtgtaaagagtggcaacaaacaatcatatggtacattataaaaataaaactattatcccaacaaaatagtcttgc |
251 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||| |||||||||||| ||||| |
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| T |
44911826 |
tggttgtttctttgatagtgggattgtgtaaagagcggcaacaaacaatcat--ggtacattataaaaataaaactattataccaacaaaatagccttgc |
44911923 |
T |
|
| Q |
252 |
caaagaatttggaaactcaaatttgaaacaagaaaagaaattgcagcaaagggatgaattgaaaggctgaaaagattatgctgtggttataaaagttaga |
351 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||| |
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| T |
44911924 |
caaagaatttggaaactcaaatttgaaacaagaaaagaaattgcagcaaagggatgaaacgaaaggctgaaaagattacgctgtggttataaaagttaga |
44912023 |
T |
|
| Q |
352 |
gatcatagtaaatatttgatccaatg |
377 |
Q |
| |
|
|||||||||||| ||||||||||||| |
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|
| T |
44912024 |
gatcatagtaaagatttgatccaatg |
44912049 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 1 - 115
Target Start/End: Original strand, 44911714 - 44911828
Alignment:
| Q |
1 |
tttaccgttcatgccattcatctatcttccatcttctcgtttctattaattctcattaggttcatcgtcatcacaacaacaccaacccctcttgtttcat |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44911714 |
tttaccgttcatgccattcatctatcttccatcttctcgtttctattaattttcattaggttcatcgtcatcacaacaacaccaacccctcttgtttcat |
44911813 |
T |
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| Q |
101 |
accttcttcccatgg |
115 |
Q |
| |
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||||||||||||||| |
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| T |
44911814 |
accttcttcccatgg |
44911828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 1 - 125
Target Start/End: Complemental strand, 3769117 - 3768993
Alignment:
| Q |
1 |
tttaccgttcatgccattcatctatcttccatcttctcgtttctattaattctcattaggttcatcgtcatcacaacaacaccaacccctcttgtttcat |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| |||||||||||||||||||||||| |
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| T |
3769117 |
tttaccgttcatgccattcatctatcttccatcttctcgtttctattaattttcatttggttcatcgtcatcacagcaacaccaacccctcttgtttcat |
3769018 |
T |
|
| Q |
101 |
accttcttcccatggattgtctcaa |
125 |
Q |
| |
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|||||||||||||||||||| |||| |
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| T |
3769017 |
accttcttcccatggattgtgtcaa |
3768993 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 688 - 823
Target Start/End: Original strand, 44912046 - 44912184
Alignment:
| Q |
688 |
aatgttcttctcatataagttatttctacataaaattggagacagttnnnnnnn---ggcaaattaaaagagaatgaactttgaatattaaaattgataa |
784 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44912046 |
aatgttcttctcatataagttatttctacataaaattggagacaattaaaaaaaaaaggcaaattaaaagagaatgaactttgaatattaaaattgataa |
44912145 |
T |
|
| Q |
785 |
gccaactgtattcctatttttcttagcaaataacgaagt |
823 |
Q |
| |
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||||||||||||||||||||||| ||||||||||||||| |
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| T |
44912146 |
gccaactgtattcctatttttctaagcaaataacgaagt |
44912184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 667 - 806
Target Start/End: Original strand, 44918034 - 44918173
Alignment:
| Q |
667 |
atatgttgcttattcaattataatgttcttctcatataagttatttctacataaaattggagacagttnnnnnnn-ggcaaattaaaagagaatgaactt |
765 |
Q |
| |
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|||||||||| |||||||||| ||||||| ||||||| || |||||| ||||||||||||||| |||| |||||||||||||||||||||||| |
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| T |
44918034 |
atatgttgctcattcaattatcatgttctcctcatatgagatatttcaacataaaattggagatagttcaataaaaggcaaattaaaagagaatgaactt |
44918133 |
T |
|
| Q |
766 |
tgaatattaaaattgataagccaactgtattcctatttttc |
806 |
Q |
| |
|
|||||| | ||||||||||| |||| |||||||||||||| |
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| T |
44918134 |
tgaata-tgaaattgataaggcaacaatattcctatttttc |
44918173 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 124 - 164
Target Start/End: Complemental strand, 3768615 - 3768575
Alignment:
| Q |
124 |
aacaagcatttgcaacaaaactctttgctggttgtttcttt |
164 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3768615 |
aacaagcatttgcaacaaaactctttgctggttgtttcttt |
3768575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 369 - 407
Target Start/End: Complemental strand, 23244890 - 23244852
Alignment:
| Q |
369 |
gatccaatggtcaccatttgatcctctcatcctctcatt |
407 |
Q |
| |
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||||||||||||||||||||||| ||||| ||||||||| |
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| T |
23244890 |
gatccaatggtcaccatttgatcatctcaccctctcatt |
23244852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 123; Significance: 1e-62; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 123; E-Value: 1e-62
Query Start/End: Original strand, 124 - 299
Target Start/End: Original strand, 6354454 - 6354636
Alignment:
| Q |
124 |
aacaagcatttgcaacaaaactctttgctggttgtttcttt-gatagtggg-attgtgtaaagagtggcaacaaacaatcat-----atggtacattata |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||| |||||||||||||||| || || |||||| |
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| T |
6354454 |
aacaagcatttgcaacaaaactctttgctggttgtttcttttgatagtggggattgtgtaaagagcggcaacaaacaatcatggtacattataaattata |
6354553 |
T |
|
| Q |
217 |
aaaataaaactattatcccaacaaaatagtcttgccaaagaatttggaaactcaaatttgaaacaagaaaagaaattgcagca |
299 |
Q |
| |
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||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
6354554 |
aaaataaaattattatcccaacaaaatagtcttgccaaagaatttggaaagtcaaatttgaaacaagaaaagaaattgcagca |
6354636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 1 - 125
Target Start/End: Original strand, 6353950 - 6354074
Alignment:
| Q |
1 |
tttaccgttcatgccattcatctatcttccatcttctcgtttctattaattctcattaggttcatcgtcatcacaacaacaccaacccctcttgtttcat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| ||||||||||| |
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| T |
6353950 |
tttaccgttcatgccattcatctatcttccatcttctcgtttctattaattttcattcggttcatcgtcatcacaacaacaccaacccatcttgtttcat |
6354049 |
T |
|
| Q |
101 |
accttcttcccatggattgtctcaa |
125 |
Q |
| |
|
|||||||||||||||||||| |||| |
|
|
| T |
6354050 |
accttcttcccatggattgtgtcaa |
6354074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 298 - 403
Target Start/End: Original strand, 6354668 - 6354772
Alignment:
| Q |
298 |
caaagggatgaattgaaaggctgaaaagattatgctgtggttataaaagttagagatcatagtaaatatttgatccaatggtcaccatttgatcctctca |
397 |
Q |
| |
|
|||||||||||| ||||||||||||| |||| ||||||||||||||||||||||||||||||| | |||||||||||||||||||||||| |||||| |
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|
| T |
6354668 |
caaagggatgaaacgaaaggctgaaaatattacaatgtggttataaaagttagagatcatagtaaaga-ttgatccaatggtcaccatttgattctctca |
6354766 |
T |
|
| Q |
398 |
tcctct |
403 |
Q |
| |
|
|||||| |
|
|
| T |
6354767 |
tcctct |
6354772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 105; Significance: 5e-52; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 105; E-Value: 5e-52
Query Start/End: Original strand, 1 - 125
Target Start/End: Original strand, 3928600 - 3928724
Alignment:
| Q |
1 |
tttaccgttcatgccattcatctatcttccatcttctcgtttctattaattctcattaggttcatcgtcatcacaacaacaccaacccctcttgtttcat |
100 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
3928600 |
tttaccgttcatgtcattcatctatcttccatcttctcgtttctattaattttcattcggttcatcgtcatcacaacaacaccaacccctcttgtttcat |
3928699 |
T |
|
| Q |
101 |
accttcttcccatggattgtctcaa |
125 |
Q |
| |
|
||||||||||||| |||||| |||| |
|
|
| T |
3928700 |
accttcttcccatagattgtgtcaa |
3928724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 85; E-Value: 5e-40
Query Start/End: Original strand, 204 - 296
Target Start/End: Original strand, 3928981 - 3929073
Alignment:
| Q |
204 |
atggtacattataaaaataaaactattatcccaacaaaatagtcttgccaaagaatttggaaactcaaatttgaaacaagaaaagaaattgca |
296 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| |
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|
| T |
3928981 |
atggtacattataaaaataaaactattatcccaacaaaatagccttgccaaagaatttggaaagtcaaatttgaaacaagaaaagaaattgca |
3929073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 311 - 407
Target Start/End: Original strand, 3929116 - 3929211
Alignment:
| Q |
311 |
tgaaaggctgaaaagattatgctgtggttataaaagttagagatcatagtaaatatttgatccaatggtcaccatttgatcctctcatcctctcatt |
407 |
Q |
| |
|
||||||| ||||||||||| ||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3929116 |
tgaaagggtgaaaagattacgctgtggttataaaagttagagatcatagtaaaga-ttgatccaatggtcaccatttgatcctctcatcctctcatt |
3929211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 30372895 - 30372845
Alignment:
| Q |
1 |
tttaccgttcatgccattcatctatcttccatcttctcgtttctattaatt |
51 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30372895 |
tttaccgttcatgtcattcatctatcttccatcttctcgtttctattaatt |
30372845 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 369 - 407
Target Start/End: Original strand, 6437366 - 6437404
Alignment:
| Q |
369 |
gatccaatggtcaccatttgatcctctcatcctctcatt |
407 |
Q |
| |
|
||||||||||||||||||||||| ||||| ||||||||| |
|
|
| T |
6437366 |
gatccaatggtcaccatttgatcatctcaccctctcatt |
6437404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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