View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17880_low_3 (Length: 371)
Name: NF17880_low_3
Description: NF17880
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17880_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 18 - 356
Target Start/End: Complemental strand, 46080475 - 46080136
Alignment:
| Q |
18 |
atcgaactaaacacgaactcttgatagattacaattcttgatataactactttgtttggtctgtgggaaattctttctttcgtacaatgatttaacaatg |
117 |
Q |
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| T |
46080475 |
atcgaactaaacacgaactcttaatagattacaattcttgatataactactttgtttggtctgtgggaaattctttc----gtacaatgatttaacaatg |
46080380 |
T |
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| Q |
118 |
ttgttgactcaagattttatttttgaagtactgttgttgtatcatcatatcttatcttttcgtatatatcacttataaagttcagcttagttactagttc |
217 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46080379 |
ttgttgactcaagattttaattttgaagtactgttgttgtatcatcatatcttatcttttcgtatatatcacttataaagttcagcttagttactagttc |
46080280 |
T |
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| Q |
218 |
aactcgtgtttaaatagtggcaccctgttcagatcagaagatatgttttgtctggaagtggtggctatcttagc-------ttgtaacttgattatgtcc |
310 |
Q |
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|||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||| ||||| |
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| T |
46080279 |
aactcgtgtttaaatagtagcaccctgttcagatcag-agatatgttttgtctggaagtggtggctatcttagcttgtaagttgtaacttgattgtgtcc |
46080181 |
T |
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| Q |
311 |
agtacggtccaaaatatttttagatgtcctgtaccatgatataatt |
356 |
Q |
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|||||||||||||||| |||||||||||||||| |||||||||||| |
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| T |
46080180 |
agtacggtccaaaata-ttttagatgtcctgtaacatgatataatt |
46080136 |
T |
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