View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17880_low_4 (Length: 365)
Name: NF17880_low_4
Description: NF17880
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17880_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 1 - 358
Target Start/End: Complemental strand, 34408869 - 34408512
Alignment:
| Q |
1 |
ctgcaatatcatctgacgacgacatgtttccaatcaatatatctttgcaatgcaacaatgcgatgtaaccaattacaacttattcaaaggtctagtagct |
100 |
Q |
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|||||| |||||||||||| ||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
34408869 |
ctgcaacatcatctgacgatgacatgtttccgatcaatatatctttgcaatgcaacaatgtgatgtaaccaattacaacttattcaaaggtctagtagct |
34408770 |
T |
|
| Q |
101 |
agcttgtgttctggtgtgtcttttcttttgtaattacaatttatccataagtactgtcataagttaccacaaagtgtggagattatatggaggttgagca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34408769 |
agcttgtgttctggtgtgtcttttcttttgtaattacaatttatccataagtactgtcataagttaccacaaagtgtggagattatatggaggttgagca |
34408670 |
T |
|
| Q |
201 |
ttactataaatagaactttattaatccacaagtgataacacgatctactttttcgctaaacatcactcggtcaactacatttagttagttattacagtta |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34408669 |
ttactataaatagaactttattaatccacaagtgataacacgatctactttttcgctaaacatcactcggtcaactacatttagttagttattacagtta |
34408570 |
T |
|
| Q |
301 |
gtaacaattatacgggagaaacgtatgcttcggacttgattataattatattcttcga |
358 |
Q |
| |
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|||||||||||||||||||||| |||||||||||||| ||||||||||||| ||||| |
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| T |
34408569 |
gtaacaattatacgggagaaacttatgcttcggacttagttataattatattattcga |
34408512 |
T |
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