View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17881_high_1 (Length: 384)
Name: NF17881_high_1
Description: NF17881
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17881_high_1 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 6 - 334
Target Start/End: Original strand, 45169335 - 45169667
Alignment:
| Q |
6 |
agtgagatgaaagctccaaccatgcagttgtataattcaaagtttgtggaagaagaaaacataagccatggtccatgcatgaatgccatggcttatccca |
105 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45169335 |
agtgagatgaaagctccaaccatgcagttgtataattcaaagtttgtggaagaagaaaacataagccatggtccatgcatgaatgccatggcttatccca |
45169434 |
T |
|
| Q |
106 |
gttgactgtcaatatgtctttttcaatccgtgtgcaaatgcatattatgaattcttactgttaatacgctacactggcaaaattcattattaagttcttc |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45169435 |
gttgactgtcaatatgtctttttcaatccgtgtgcaaatg-atattatgaattcttactgttaatacgctacactggcaaaattcattattaagttcttc |
45169533 |
T |
|
| Q |
206 |
tgtaagctaaacaaattgatccgtgaaagg-----ttatttgtacacaataattcaccccatggcttgtcnnnnnnnactttgtttttaatataagcaaa |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
45169534 |
tgtaagctaaacaaattgatccgtgaaaggttattttatttgtacacaataattcaccccatggcttgtctttttttactttgtttttaatataagcaaa |
45169633 |
T |
|
| Q |
301 |
agtttgttaattggagatatataatagattgtag |
334 |
Q |
| |
|
|| ||||||||| ||||||||||||||||||||| |
|
|
| T |
45169634 |
aggttgttaattagagatatataatagattgtag |
45169667 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University