View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17881_high_5 (Length: 239)
Name: NF17881_high_5
Description: NF17881
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17881_high_5 |
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Alignment Details
Target: chr8 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 4098481 - 4098701
Alignment:
| Q |
1 |
tgatctttgatttaagaatatattcatgcagatttttggagtaattaatagtaccgtacgaacgtcgttgcaagctggataatacaattttgtttctatt |
100 |
Q |
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| T |
4098481 |
tgatctttgatttaagaatatattcatgcagatttttggagtaattaatagtaccgtacgaacgtcgttgcaagctggataatacaattttgtttctatt |
4098580 |
T |
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| Q |
101 |
ttgaccactgtactatttttgtagctaacatcatgaagaggaaggaaaaaacaatattcaccaattaatgaccattgaagcaccatcactcctagatttt |
200 |
Q |
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| T |
4098581 |
ttgaccactgtactatttttgtagctaacatcatgaagaggaaggaaaaaacaatattcaccaattaatgaccattgaagcaccatcactcctagatttt |
4098680 |
T |
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| Q |
201 |
aggatttgtacaccatttgcc |
221 |
Q |
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|||||||||||| ||||||| |
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| T |
4098681 |
gggatttgtacactatttgcc |
4098701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 7 - 45
Target Start/End: Original strand, 945500 - 945538
Alignment:
| Q |
7 |
ttgatttaagaatatattcatgcagatttttggagtaat |
45 |
Q |
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||||||||||||||||||||||||||| ||||||||||| |
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| T |
945500 |
ttgatttaagaatatattcatgcagatgtttggagtaat |
945538 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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