View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17881_low_1 (Length: 442)
Name: NF17881_low_1
Description: NF17881
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17881_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 368; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 12 - 434
Target Start/End: Original strand, 44827492 - 44827914
Alignment:
| Q |
12 |
atgatatggacaattcaagacttaaactnnnnnnnnncacaaaggagatggggatatgaaatgaatgattgtactcacaatgcgcattgcatttgattgt |
111 |
Q |
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| T |
44827492 |
atgatatggacaattcaagacttggactaaaaaaaaacacaaaggagatggggatatgaaatgaatgattgtactcacaatgcgcattgcatttgattgt |
44827591 |
T |
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| Q |
112 |
ccattttcgctcatggatccatgtggcattgactcttcagcatacatgtatctagcaacttccgtacaagtcttcatcataaaaagtatgttcttagcta |
211 |
Q |
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|||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
44827592 |
ccattttcgcccatggatccatgtgggattgactcttcagcatacatgtatctagcaacttccgtgcaagtcttcatcataaaaagtatgttcttagcta |
44827691 |
T |
|
| Q |
212 |
taagacaactgcaaagcataaattgcatataagccaaaacatgagaaaaatggacttagcttaaatatgaggtgaaaaatgagaaagatttttataccta |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
44827692 |
taagacaactgcaaagcataaattgcatataagccaaaacattagaaaaatggacttagcttaaatgtgaggtgaaaaatgagaaagatttttataccta |
44827791 |
T |
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| Q |
312 |
tttctcccaaacatttctattcccttcaagtataattctttttccaaaagtttccaatccgaaggaatagactcctcctcagcttgtccttctattgagt |
411 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44827792 |
tttctcccaaacatttctattcccttcaagtataattctttttccaaaagtttccaatccgaaggaatagactcctcctcagcttgtccttctattgagt |
44827891 |
T |
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| Q |
412 |
cagacaagtgcttggattttctt |
434 |
Q |
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| T |
44827892 |
cagacaagtgcttggattttctt |
44827914 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 66; Significance: 5e-29; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 113 - 222
Target Start/End: Original strand, 8371351 - 8371460
Alignment:
| Q |
113 |
cattttcgctcatggatccatgtggcattgactcttcagcatacatgtatctagcaacttccgtacaagtcttcatcataaaaagtatgttcttagctat |
212 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||| | |||||||||||||| ||||||| |||||| | ||| |
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| T |
8371351 |
cattttcgctcatggatccatgtggcattggaacttcagcatacatgtagctagcaacttccttgcaagtcttcatcatgaaaagtaagttcttcgatat |
8371450 |
T |
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| Q |
213 |
aagacaactg |
222 |
Q |
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||| |||||| |
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| T |
8371451 |
aaggcaactg |
8371460 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 113 - 230
Target Start/End: Original strand, 8369951 - 8370068
Alignment:
| Q |
113 |
cattttcgctcatggatccatgtggcattgactcttcagcatacatgtatctagcaacttccgtacaagtcttcatcataaaaagtatgttcttagctat |
212 |
Q |
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|||||||| |||||||||||||| ||||| ||||| |||||||||| |||||||||||| | |||||||||||||||||||||| |||||| | ||| |
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| T |
8369951 |
cattttcgtccatggatccatgtgacattggaacttcatcatacatgtagctagcaacttccttgcaagtcttcatcataaaaagtaagttcttcgatat |
8370050 |
T |
|
| Q |
213 |
aagacaactgcaaagcat |
230 |
Q |
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||| |||||||| ||||| |
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| T |
8370051 |
aaggcaactgcatagcat |
8370068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 283 - 369
Target Start/End: Original strand, 8371539 - 8371623
Alignment:
| Q |
283 |
gtgaaaaatgagaaagatttttatacctatttctcccaaacatttctattcccttcaagtataattctttttccaaaagtttccaat |
369 |
Q |
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| T |
8371539 |
gtgaaaaataagaaagattc--atacctatttctcccaaacatttctattcccttcatacatagttctttctccaaaagtttccaat |
8371623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 283 - 368
Target Start/End: Original strand, 8370139 - 8370222
Alignment:
| Q |
283 |
gtgaaaaatgagaaagatttttatacctatttctcccaaacatttctattcccttcaagtataattctttttccaaaagtttccaa |
368 |
Q |
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| T |
8370139 |
gtgaaaaataagaaagattc--atacctatttctcccaaacatttctattcccttcagacataaatctttctccaaaagtttccaa |
8370222 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 305 - 370
Target Start/End: Complemental strand, 38936358 - 38936293
Alignment:
| Q |
305 |
atacctatttctcccaaacatttctattcccttcaagtataattctttttccaaaagtttccaatc |
370 |
Q |
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|||||| ||||| ||||||||||| | ||||||||||||||| ||||| || | | |||||||||| |
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| T |
38936358 |
atacctgtttctgccaaacatttccactcccttcaagtataactctttctctagaggtttccaatc |
38936293 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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