View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17881_low_3 (Length: 352)
Name: NF17881_low_3
Description: NF17881
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17881_low_3 |
 | |
|
| [»] scaffold0063 (1 HSPs) |
| | |
|
| [»] scaffold0032 (1 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 154; Significance: 1e-81; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 115 - 324
Target Start/End: Complemental strand, 17603165 - 17602956
Alignment:
| Q |
115 |
tgaggattgtcctcaaacatgaaaagaagttgcatgtgcttgatgagcctgtttcagaaatggtgccatcagctacaactccttgagctgaaagggatgc |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||| |||||||| ||| || |||||||||||||||||| |||||| |||||||| | |
|
|
| T |
17603165 |
tgaggattgtcctcaaacatgaaaagaagttgtatgtgcttgatgagtctgtttcaaaaacggcgccatcagctacaactccctgagctaaaagggattc |
17603066 |
T |
|
| Q |
215 |
ttacaagaagcatgtcgaggatgccttgcaagtttcctgtatcaagcaatcaaccatggactttgagatacaaaaacaacatgagaacatggatgtgttc |
314 |
Q |
| |
|
|||||||||||||||||| ||||||||| |||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
17603065 |
ttacaagaagcatgtcgatgatgccttggaagttttctgtatcaagcaatcaaccatggactttgagccgcaaaaacaacatgagaacatggatgtgttc |
17602966 |
T |
|
| Q |
315 |
gatatgatca |
324 |
Q |
| |
|
|||||||||| |
|
|
| T |
17602965 |
gatatgatca |
17602956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 17603336 - 17603268
Alignment:
| Q |
1 |
aagttactttgttttgaataaattggtgagagcatatttaattaaataccaaaataaatatgttaattt |
69 |
Q |
| |
|
|||||| ||| ||||||||||| |||||||||||||||||||||||||| |||| |||||||||||||| |
|
|
| T |
17603336 |
aagttaattttttttgaataaaatggtgagagcatatttaattaaatactaaaaaaaatatgttaattt |
17603268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 115 - 160
Target Start/End: Original strand, 8528636 - 8528681
Alignment:
| Q |
115 |
tgaggattgtcctcaaacatgaaaagaagttgcatgtgcttgatga |
160 |
Q |
| |
|
||||||||||||||| |||||| || |||||| ||||||||||||| |
|
|
| T |
8528636 |
tgaggattgtcctcacacatgagaaaaagttgtatgtgcttgatga |
8528681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0063 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0063
Description:
Target: scaffold0063; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 8 - 64
Target Start/End: Original strand, 378 - 434
Alignment:
| Q |
8 |
tttgttttgaataaattggtgagagcatatttaattaaataccaaaataaatatgtt |
64 |
Q |
| |
|
|||||||||| |||| | ||| ||||||||||||||||| ||| || |||||||||| |
|
|
| T |
378 |
tttgttttgagtaaaatagtgggagcatatttaattaaagacctaattaaatatgtt |
434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0032 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0032
Description:
Target: scaffold0032; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 8 - 64
Target Start/End: Complemental strand, 113314 - 113258
Alignment:
| Q |
8 |
tttgttttgaataaattggtgagagcatatttaattaaataccaaaataaatatgtt |
64 |
Q |
| |
|
|||||||||| |||| | ||| ||||||||||||||||| ||| || |||||||||| |
|
|
| T |
113314 |
tttgttttgagtaaaatagtgggagcatatttaattaaagacctaattaaatatgtt |
113258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 8 - 64
Target Start/End: Original strand, 24639634 - 24639690
Alignment:
| Q |
8 |
tttgttttgaataaattggtgagagcatatttaattaaataccaaaataaatatgtt |
64 |
Q |
| |
|
|||||||||| |||| | ||| ||||||||||||||||| ||| || |||||||||| |
|
|
| T |
24639634 |
tttgttttgagtaaaatagtgggagcatatttaattaaagacctaattaaatatgtt |
24639690 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 8 - 64
Target Start/End: Complemental strand, 19922941 - 19922885
Alignment:
| Q |
8 |
tttgttttgaataaattggtgagagcatatttaattaaataccaaaataaatatgtt |
64 |
Q |
| |
|
||||||||||||||| | ||| ||||||||||||||||| ||| || ||| |||||| |
|
|
| T |
19922941 |
tttgttttgaataaaatagtgggagcatatttaattaaagacctaattaattatgtt |
19922885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 8 - 64
Target Start/End: Original strand, 26967452 - 26967508
Alignment:
| Q |
8 |
tttgttttgaataaattggtgagagcatatttaattaaataccaaaataaatatgtt |
64 |
Q |
| |
|
||||||||||||||| | ||| ||||||||||||||||| ||| || ||| |||||| |
|
|
| T |
26967452 |
tttgttttgaataaaatagtgggagcatatttaattaaagacctaattaattatgtt |
26967508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University