View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17881_low_4 (Length: 248)
Name: NF17881_low_4
Description: NF17881
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17881_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 183; Significance: 4e-99; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 4098398 - 4098162
Alignment:
| Q |
1 |
aagcatatcaaatgaacaattagtgatgggagttagtttgaataaacttctctctaaacacttaagaaaaatttgtataccattttccttattactttga |
100 |
Q |
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| T |
4098398 |
aagcatatcaaatgaacaattagtgatgggagttagtttgaataaacttctctctaaacacttaagaaaaatttgtataccattttccttattactttga |
4098299 |
T |
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| Q |
101 |
ttnnnnnnnnnnnnnnnnnnctaatgataaaacagtaatagaattgtggatataccgatccccacaatgcaggtgcaaatagttccttcaaattgatttg |
200 |
Q |
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| T |
4098298 |
ttaaaaataaaaaataaaaactaatgataaaacagtaatagaattgtggatataccgatccccacaatgcaggtgcaaatagttccttcaaattgatttg |
4098199 |
T |
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| Q |
201 |
tcgcttaatatttttagatgtttcataatgtttgcct |
237 |
Q |
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| T |
4098198 |
tcgcttaatatttttagatgtttcataatgtttgcct |
4098162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 1 - 247
Target Start/End: Complemental strand, 945419 - 945175
Alignment:
| Q |
1 |
aagcatatcaaatgaacaattagtgatgggagttagtttgaataaacttctctctaaacacttaagaaaaatttgtataccattttccttattactttga |
100 |
Q |
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||||||||||||||||||||||||| | ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || |
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| T |
945419 |
aagcatatcaaatgaacaattagtgctaggagttaatttgaataaacttctctctaaacacttaagaaaaatttgtataccattt-ccttattactt-ga |
945322 |
T |
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| Q |
101 |
ttnnnnnnnnnnnnnnnnnnctaatgataaaacagtaatagaattgtggatataccgatccccacaatgcaggtgcaaatagttccttcaaattga-ttt |
199 |
Q |
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| T |
945321 |
ttaaaaaataatcagaaaa-ctaatgagaaaacaataatagaattgtggacataccgatccccacaatgcaggtgcaaatagttccttcaatttgatttt |
945223 |
T |
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| Q |
200 |
gtcgcttaatatttttagatgtttcataatgtttgcctatgctactac |
247 |
Q |
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| T |
945222 |
gtcacctaatattttcagatgtttcataatgtttggcttttctactac |
945175 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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