View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17881_low_7 (Length: 220)
Name: NF17881_low_7
Description: NF17881
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17881_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 123; Significance: 2e-63; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 24 - 150
Target Start/End: Original strand, 2941681 - 2941807
Alignment:
| Q |
24 |
ttacaattagacaaaactgttcaaggctttctctggatatattatcttgaatatgaacatatcatattgtaagaaccatttttatttcattattttctct |
123 |
Q |
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| T |
2941681 |
ttacaattagacaaaactgttcaaggctttctctggatatattatcttgaatatgaacatttcatattgtaagaaccatttttatttcattattttctct |
2941780 |
T |
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| Q |
124 |
tttatatgggaaccgacttatatgaac |
150 |
Q |
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| T |
2941781 |
tttatatgggaaccgacttatatgaac |
2941807 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 167 - 203
Target Start/End: Complemental strand, 1895295 - 1895259
Alignment:
| Q |
167 |
aaccatatattatacatagcctacctatattgtatct |
203 |
Q |
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| T |
1895295 |
aaccatatattatacatagccaacctatattgtatct |
1895259 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 167 - 203
Target Start/End: Complemental strand, 1904741 - 1904705
Alignment:
| Q |
167 |
aaccatatattatacatagcctacctatattgtatct |
203 |
Q |
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| T |
1904741 |
aaccatatattatacatagccaacctatattgtatct |
1904705 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 171 - 203
Target Start/End: Complemental strand, 1912161 - 1912129
Alignment:
| Q |
171 |
atatattatacatagcctacctatattgtatct |
203 |
Q |
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| T |
1912161 |
atatattatacatagcctacctatattgtatct |
1912129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 167 - 203
Target Start/End: Original strand, 2933548 - 2933584
Alignment:
| Q |
167 |
aaccatatattatacatagcctacctatattgtatct |
203 |
Q |
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| T |
2933548 |
aaccatatattatacatagcctgcctatattgtatct |
2933584 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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