View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17882_high_12 (Length: 410)
Name: NF17882_high_12
Description: NF17882
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17882_high_12 |
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Alignment Details
Target: chr8 (Bit Score: 246; Significance: 1e-136; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 23 - 284
Target Start/End: Original strand, 37956646 - 37956907
Alignment:
| Q |
23 |
ccgaaataagcacacaacataaagcttaaatgaaatacctgatccaccacccaaagttgttcaagatcactagaaggcatttcaagtgcaacaagatttt |
122 |
Q |
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| T |
37956646 |
ccgaaataagcacacaacataaagcttaaatgaaatacctgatccaccagccaaagtcgttcaagatcactagaaggcatttcaagtgcaacaagatttt |
37956745 |
T |
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| Q |
123 |
ctgggaaagcttgcggcaaatatctttgagggaagttctcctagcaaagaaattttaaagcatccggaagactctcaagaaatgcatgaaaggtcccatt |
222 |
Q |
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| T |
37956746 |
ctgggaaagcttgcggcaaatatctttgagggaagttctcccaacaaagaaattttaaagcatccggaagactctcaagaaatgcatgaaaggtcccatt |
37956845 |
T |
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| Q |
223 |
tgagctccaagagagatcatagaattggagcattctaagattacgcattttcttaaaagttt |
284 |
Q |
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| T |
37956846 |
tgagctccaagagagatcatagaattggagcattctaagattacgcattttcttaaaagttt |
37956907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 317 - 391
Target Start/End: Original strand, 37956902 - 37956976
Alignment:
| Q |
317 |
aagtttaggaatatacaccggattgcatctgttccctacaagcaagcaaacattgggaactattagagataaaac |
391 |
Q |
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| T |
37956902 |
aagtttaggaatatacaccggattgcatctgttccctacaagcaagcaaacattgggaattattacagataaaac |
37956976 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 30 - 206
Target Start/End: Complemental strand, 37931051 - 37930871
Alignment:
| Q |
30 |
aagcacacaacataaagctt-aaatgaaatacctgatccaccacccaaagttgttcaagatcactagaaggcatttcaagtgcaacaagattttctggg- |
127 |
Q |
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| T |
37931051 |
aagcacacaacataaaacttgaaatgaattacctgatctccctcccaaagttgttcaagacggctatgaggcatatcaagtttaacaagattttctgggc |
37930952 |
T |
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| Q |
128 |
aaagct--tgcggcaaatatctttgagggaagttctcctagcaaagaaattttaaagcatccggaagactctcaagaaatg |
206 |
Q |
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| T |
37930951 |
aaaactccaggggcaaagatctttgaggaaagctatcccaacgaagaaattttaaatcatccgggagaatcttaagaaatg |
37930871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 241 - 359
Target Start/End: Complemental strand, 37930824 - 37930706
Alignment:
| Q |
241 |
atagaattggagcattctaagattacgcattttcttaaaagtttcagcatgtagttgaactttcattatataacataagtttaggaatatacaccggatt |
340 |
Q |
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|||||| |||| |||||||||||| |||| ||||| ||||||||| ||||||||| || |||| |||| | || || |||||||| ||| ||||| |
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| T |
37930824 |
atagaactggatgattctaagattatgcatcttcttgaaagtttcaacatgtagttcaattttctttattttgcacgtgtccaggaatatgcactggatt |
37930725 |
T |
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| Q |
341 |
gcatctgttccctacaagc |
359 |
Q |
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|||||||||||||| |||| |
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| T |
37930724 |
gcatctgttccctaaaagc |
37930706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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