View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17882_high_13 (Length: 365)

Name: NF17882_high_13
Description: NF17882
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17882_high_13
NF17882_high_13
[»] chr1 (7 HSPs)
chr1 (247-351)||(28666770-28666874)
chr1 (25-116)||(28666876-28666967)
chr1 (200-323)||(41941005-41941131)
chr1 (200-281)||(30848889-30848967)
chr1 (64-231)||(6397661-6397820)
chr1 (54-91)||(7440960-7440997)
chr1 (280-321)||(44608575-44608616)
[»] chr5 (3 HSPs)
chr5 (54-247)||(41715022-41715207)
chr5 (61-223)||(7237068-7237225)
chr5 (54-324)||(38755532-38755786)
[»] chr8 (6 HSPs)
chr8 (54-231)||(14958008-14958180)
chr8 (69-185)||(15292567-15292680)
chr8 (69-185)||(15472936-15473049)
chr8 (62-123)||(9293232-9293293)
chr8 (256-325)||(34697194-34697263)
chr8 (282-324)||(34695916-34695958)
[»] chr2 (2 HSPs)
chr2 (48-279)||(38288428-38288647)
chr2 (54-258)||(31395151-31395341)
[»] chr6 (8 HSPs)
chr6 (56-222)||(33908574-33908728)
chr6 (54-278)||(9627135-9627333)
chr6 (57-261)||(1415476-1415672)
chr6 (54-145)||(12155387-12155476)
chr6 (279-324)||(33908741-33908786)
chr6 (232-282)||(10384091-10384141)
chr6 (154-222)||(12155933-12155998)
chr6 (275-320)||(9405126-9405171)
[»] chr3 (6 HSPs)
chr3 (54-181)||(11630060-11630186)
chr3 (44-178)||(8543073-8543210)
chr3 (63-129)||(8541448-8541515)
chr3 (94-137)||(43361690-43361733)
chr3 (232-266)||(8540980-8541014)
chr3 (232-266)||(8543031-8543065)
[»] chr4 (3 HSPs)
chr4 (61-186)||(865245-865368)
chr4 (159-279)||(3284192-3284307)
chr4 (47-122)||(3284089-3284166)
[»] scaffold0035 (1 HSPs)
scaffold0035 (56-229)||(24407-24574)
[»] chr7 (1 HSPs)
chr7 (55-106)||(15077104-15077155)
[»] scaffold0027 (2 HSPs)
scaffold0027 (56-122)||(43611-43677)
scaffold0027 (242-323)||(43790-43870)


Alignment Details
Target: chr1 (Bit Score: 105; Significance: 2e-52; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 247 - 351
Target Start/End: Complemental strand, 28666874 - 28666770
Alignment:
Q  247 cgattcagtttacaatattactcctgaaccgtaccttgccttcttccgtgtcttgtatatatgagccatacttcaacaaatgctggttgaagggactagt 346  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28666874 cgattcagtttacaatattactcctgaaccgtaccttgccttcttccgtgtcttgtatatatgagccatacttcaacaaatgctggttgaagggactagt 28666775  T
Q  347 tcttc 351  Q
    |||||    
T  28666774 tcttc 28666770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 25 - 116
Target Start/End: Complemental strand, 28666967 - 28666876
Alignment:
Q  25 atagacatagctaacattaatgttgttagaacaactagtaacaaaagattaaataagagaacgaaagagaaagacaatgaacgcatgatatt 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  28666967 atagacatagctaacattaatgttgttagaacaactagtaacaaaagattaaataagagaacgaaagagaaagacaatgaacgcacgatatt 28666876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 200 - 323
Target Start/End: Complemental strand, 41941131 - 41941005
Alignment:
Q  200 gaatcagggtttcagtgttacaagcaatatattata-tagtactactacgattcagtttacaatattactcctgaaccgtac---cttgccttcttccgt 295  Q
    |||| ||||||||| ||||||||| ||||||| ||| || ||||||||||||||||||||||||||||| ||| |||||||    | |||||||||   |    
T  41941131 gaattagggtttcaatgttacaagtaatatat-atactactactactacgattcagtttacaatattacccctaaaccgtatactcatgccttctttaat 41941033  T
Q  296 gtcttgtatatatgagccatacttcaac 323  Q
    |||||||||||||||| |||||||||||    
T  41941032 gtcttgtatatatgagtcatacttcaac 41941005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 200 - 281
Target Start/End: Complemental strand, 30848967 - 30848889
Alignment:
Q  200 gaatcagggtttcagtgttacaagcaatatattatatagtactactacgattcagtttacaatattactcctgaaccgtacc 281  Q
    |||| ||||||| |||| ||||| ||||||||   ||||||| ||||| ||||||||||||||||||| | |||||||||||    
T  30848967 gaattagggtttaagtggtacaaacaatatat---atagtaccactacaattcagtttacaatattacccttgaaccgtacc 30848889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 64 - 231
Target Start/End: Original strand, 6397661 - 6397820
Alignment:
Q  64 aacaaaagattaaataagagaacgaaagagaaagacaatgaacgcatgatatttgttaacgtagtttgaccaattgtgcctatacctctacgacaataga 163  Q
    |||| |||||||||||||||||| ||||  ||| |||| ||||  |  ||||||||||||| | || | ||| |||||||||  |||||  ||| |||||    
T  6397661 aacataagattaaataagagaaccaaagtaaaacacaacgaacatacaatatttgttaacgcacttcggcca-ttgtgccta--cctctgtgactataga 6397757  T
Q  164 gcaactatagttccgtttctattactgtactgattagaatcagggtttcagtgttacaagcaatatat 231  Q
    ||| ||||||||  |||||||||||||   ||||  |||  | |||||||||||||||||||||||||    
T  6397758 gcagctatagttttgtttctattactg---tgat--gaactaaggtttcagtgttacaagcaatatat 6397820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 54 - 91
Target Start/End: Complemental strand, 7440997 - 7440960
Alignment:
Q  54 aacaactagtaacaaaagattaaataagagaacgaaag 91  Q
    |||| ||||||||| |||||||||||||||||||||||    
T  7440997 aacatctagtaacataagattaaataagagaacgaaag 7440960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 280 - 321
Target Start/End: Original strand, 44608575 - 44608616
Alignment:
Q  280 ccttgccttcttccgtgtcttgtatatatgagccatacttca 321  Q
    ||||| ||||||| ||||||| ||||||||||||||||||||    
T  44608575 ccttgacttcttcagtgtcttctatatatgagccatacttca 44608616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 85; Significance: 2e-40; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 54 - 247
Target Start/End: Complemental strand, 41715207 - 41715022
Alignment:
Q  54 aacaactagtaacaaaagattaaataagagaacgaaagagaaagacaatgaacgcatgatatttgttaacgtagtttgaccaattgtgcctatacctcta 153  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||  | ||| || ||||| | |||| |  ||||||||||||  ||||||    
T  41715207 aacaactagtaacaaaagattaaataagagaacgaaagagaaagacaattaacatacgatctt-gttaatgcagttcggacaattgtgccta--cctcta 41715111  T
Q  154 cgacaatagagcaactatagttccgtttctattactgtactgattagaatcagggtttcagtgttacaagcaatatattatatagtactactac 247  Q
    |||| |||||||| |||||||||||||||||||||||   |||| ||||| |||| ||||||||||||||||||||| |||||||||| |||||    
T  41715110 cgacgatagagcatctatagttccgtttctattactg---tgatgagaat-aggggttcagtgttacaagcaatata-tatatagtaccactac 41715022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 61 - 223
Target Start/End: Original strand, 7237068 - 7237225
Alignment:
Q  61 agtaacaaaagattaaataagagaacgaaagagaaagacaatgaacgcatgatatttgttaacgtagtttgaccaattgtgcctatacctctacgacaat 160  Q
    |||||||||||||||||||||||||||||||| ||||||||||||| || ||||||||||| || |||| | |||||| ||  | ||||||| || | ||    
T  7237068 agtaacaaaagattaaataagagaacgaaagaaaaagacaatgaacacacgatatttgttaccgcagttcggccaattttg--tctacctctgcggctat 7237165  T
Q  161 agagcaactatagttccgtttctattactgtactgattagaatcagggtttcagtgttacaag 223  Q
    |||||| ||||| |||| ||| ||||||||   |||| ||||| |||||||| ||||||||||    
T  7237166 agagcagctataattccatttttattactg---tgataagaattagggtttcggtgttacaag 7237225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 54 - 324
Target Start/End: Complemental strand, 38755786 - 38755532
Alignment:
Q  54 aacaactagtaacaaaagattaaataagagaacgaaagagaaagacaatgaacgcatgatatttgttaacgtagtttgaccaattgtgcctatacctcta 153  Q
    ||||||||||||||||||||||||||||||||||||||||||||   |||||| ||  |||||||||||   ||||||  ||||||||||  |||||||     
T  38755786 aacaactagtaacaaaagattaaataagagaacgaaagagaaag---atgaacacaccatatttgttaatacagtttggtcaattgtgcc--tacctctg 38755692  T
Q  154 cgacaatagagcaactatagttccgtttctattactgtactgattagaatcagggtttcagtgttacaagcaatatattatatagtactactacgattca 253  Q
    |||  |||||  |  ||||||||     |||||||||   |||| | ||| || |||| |||||||||| |  ||   ||||||| |||||||||| |||    
T  38755691 cgattatagaatagttatagttc-----ctattactg---tgataaaaat-agagttttagtgttacaaactgta---tatatagcactactacgactca 38755604  T
Q  254 gtttacaatattactcctgaaccgt-accttgccttcttccgtgtcttgtatatatgagccatacttcaaca 324  Q
    | ||||||||||||  ||||||||| || |||||||||||  | |||| |||||||||| ||||||||||||    
T  38755603 ggttacaatattaccactgaaccgtaacattgccttcttcaatatcttctatatatgagtcatacttcaaca 38755532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 81; Significance: 5e-38; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 54 - 231
Target Start/End: Complemental strand, 14958180 - 14958008
Alignment:
Q  54 aacaactagtaacaaaagattaaataagagaacgaaagagaaagacaatgaacgcatgatatttgttaacgtagtttgaccaattgtgcctatacctcta 153  Q
    |||||||||||||||||||||||| ||||||||||||||| ||||||||||||  | |||||||||||||  |||| | |||||||||||  |||||||     
T  14958180 aacaactagtaacaaaagattaaacaagagaacgaaagaggaagacaatgaacataggatatttgttaacacagttcggccaattgtgcc--tacctctg 14958083  T
Q  154 cgacaatagagcaactatagttccgtttctattactgtactgattagaatcagggtttcagtgttacaagcaatatat 231  Q
    |||  |||||||| ||||||||  |||||||||||||   |||  ||||| |||||||||||||||||||||||||||    
T  14958082 cgattatagagcagctatagttatgtttctattactg---tgagaagaattagggtttcagtgttacaagcaatatat 14958008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 69 - 185
Target Start/End: Original strand, 15292567 - 15292680
Alignment:
Q  69 aagattaaataagagaacgaaagagaaagacaatgaacgcatgatatttgttaacgtagtttgaccaattgtgcctatacctctacgacaatagagcaac 168  Q
    |||||||||||||||||||||||  ||||  ||||||| || |||| ||||||||| |||| ||||||||||||||||  ||||||||| ||| ||||||    
T  15292567 aagattaaataagagaacgaaagtaaaagttaatgaacacacgata-ttgttaacgcagttcgaccaattgtgcctat--ctctacgactataaagcaac 15292663  T
Q  169 tatagttccgtttctat 185  Q
    |||||||  ||||||||    
T  15292664 tatagttttgtttctat 15292680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 69 - 185
Target Start/End: Original strand, 15472936 - 15473049
Alignment:
Q  69 aagattaaataagagaacgaaagagaaagacaatgaacgcatgatatttgttaacgtagtttgaccaattgtgcctatacctctacgacaatagagcaac 168  Q
    |||||||||||||||||||||||  ||||  ||||||| || |||| ||||||||| |||| ||||||||||||||||  ||||||||| ||| ||||||    
T  15472936 aagattaaataagagaacgaaagtaaaagttaatgaacacacgata-ttgttaacgcagttcgaccaattgtgcctat--ctctacgactataaagcaac 15473032  T
Q  169 tatagttccgtttctat 185  Q
    |||||||  ||||||||    
T  15473033 tatagttttgtttctat 15473049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 62 - 123
Target Start/End: Original strand, 9293232 - 9293293
Alignment:
Q  62 gtaacaaaagattaaataagagaacgaaagagaaagacaatgaacgcatgatatttgttaac 123  Q
    ||||||||||||||||||||||||| ||||||||||||||||||| ||  ||||||||||||    
T  9293232 gtaacaaaagattaaataagagaacaaaagagaaagacaatgaacacacaatatttgttaac 9293293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 256 - 325
Target Start/End: Complemental strand, 34697263 - 34697194
Alignment:
Q  256 ttacaatattactcctgaaccgtaccttgccttcttccgtgtcttgtatatatgagccatacttcaacaa 325  Q
    |||||||||||   |||||  ||||||| |||||||| |||||||||||||||||| | |||||||||||    
T  34697263 ttacaatattatctctgaattgtacctttccttcttctgtgtcttgtatatatgagtcgtacttcaacaa 34697194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 282 - 324
Target Start/End: Complemental strand, 34695958 - 34695916
Alignment:
Q  282 ttgccttcttccgtgtcttgtatatatgagccatacttcaaca 324  Q
    ||||||||||| | |||||||||||||||| ||||||||||||    
T  34695958 ttgccttcttcggagtcttgtatatatgagtcatacttcaaca 34695916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 80; Significance: 2e-37; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 48 - 279
Target Start/End: Original strand, 38288428 - 38288647
Alignment:
Q  48 tgttagaacaactagtaacaaaagattaaataagagaacgaaagagaaagacaatgaacgcatgatatttgttaacgtagtttgaccaattgtgcctata 147  Q
    |||||||||||||||||||||||||||||||||||||  |||||||||||||||| ||| |||||||||||||||||||||| | ||||||||    ||     
T  38288428 tgttagaacaactagtaacaaaagattaaataagagattgaaagagaaagacaattaacacatgatatttgttaacgtagttcggccaattgt---aat- 38288523  T
Q  148 cctctacgacaatagagcaactatagttccgtttctattactgtactgattagaatcagggtttcagtgttacaagcaatatattatatagtactactac 247  Q
        | |||| ||||||||  |||||||  ||||||||| ||    |||| ||||| ||||||||| ||||| |||||||||| |||||| |||||||||    
T  38288524 ----tgcgactatagagcatttatagttatgtttctatttct---atgatgagaattagggtttcaatgttataagcaatata-tatataatactactac 38288615  T
Q  248 gattcagtttacaatattactcctgaaccgta 279  Q
    |||||  ||||||||||||| ||| |||||||    
T  38288616 gattctctttacaatattacccctaaaccgta 38288647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 54 - 258
Target Start/End: Original strand, 31395151 - 31395341
Alignment:
Q  54 aacaactagtaacaaaagattaaataagagaacgaaagagaaagacaatgaacgcatgatatttgttaacgtagtttgaccaattgtgcctatacctcta 153  Q
    ||||||||||||||||| || |||||||| ||||||||  ||||||||||||| ||||||||||||||||  || | | ||||| |||| ||    ||||    
T  31395151 aacaactagtaacaaaatat-aaataagaaaacgaaagtaaaagacaatgaacacatgatatttgttaacacagctcgtccaatggtgctta----tcta 31395245  T
Q  154 cgacaatagagcaactatagttccgtttctattactgtactgattagaatcagggtttcagtgttacaagcaatatattatatagtactactacgattca 253  Q
     | | ||| |||| ||||| |||||||| ||||||||   |||||      ||||||||||||||||||||||||   ||||||||||||||||||||||    
T  31395246 tggctataaagcagctataattccgtttatattactgcgatgatt------agggtttcagtgttacaagcaata---tatatagtactactacgattca 31395336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 76; Significance: 4e-35; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 56 - 222
Target Start/End: Original strand, 33908574 - 33908728
Alignment:
Q  56 caactagtaacaaaagattaaataagagaacgaaagagaaagacaatgaacgcatgatatttgttaacgtagtttgaccaattgtgcctatacctctacg 155  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| |||||||||||||  ||||          
T  33908574 caactagtaacaaaatattaaataagagaacgaaagagaaagacaatgaacacatgatatttgttaacgcagttcgaccaattgtgcc--tacc------ 33908665  T
Q  156 acaatagagcaactatagttccgtttctattactgtactgattagaatcagggtttcagtgttacaa 222  Q
     | |||||||  |||||||||||||||||||||||   ||||  |||| ||||||||||||||||||    
T  33908666 -ctatagagctgctatagttccgtttctattactg---tgataggaattagggtttcagtgttacaa 33908728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 54 - 278
Target Start/End: Original strand, 9627135 - 9627333
Alignment:
Q  54 aacaactagtaacaaaagattaaataagagaacgaaagagaaagacaatgaacgcatgatatttgttaacgtagtttgaccaattgtgcctatacctcta 153  Q
    ||||||||| |||||||||||||||||||||| |||||||||| ||||||||| ||||||||||||||||  ||||   ||||||||| ||             
T  9627135 aacaactagaaacaaaagattaaataagagaatgaaagagaaacacaatgaacacatgatatttgttaacccagttcagccaattgtgtct--------- 9627225  T
Q  154 cgacaatagagcaactatagttccgtttctattactgtactgattagaatcagggtttcagtgttacaagcaatatattatatagtactactacgattca 253  Q
             |||| ||||||||| |||||||| ||||   |||| ||||| ||||||||||||||||||||||     ||||||||||||||||||||||    
T  9627226 ---------agcagctatagttctgtttctatcactg---tgataagaattagggtttcagtgttacaagcaa-----tatatagtactactacgattca 9627308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 57 - 261
Target Start/End: Complemental strand, 1415672 - 1415476
Alignment:
Q  57 aactagtaacaaaagattaaataagagaacgaaagagaaa-gacaatgaacgcatgatatttgttaacgtagtttgaccaattgtgcctatacctctacg 155  Q
    ||||| |||||||||||||| ||||||||||||||||||| |||||| ||  || |||| ||||||||| |||| | ||||||||| |||  ||||||||    
T  1415672 aactaataacaaaagattaa-taagagaacgaaagagaaaagacaataaatacacgatacttgttaacgcagttcggccaattgtggcta--cctctacg 1415576  T
Q  156 acaatagagcaactatagttccgtttctattactgtactgattagaatcagggtttcagtgttacaagcaatatattatatagtactactacgattcagt 255  Q
    |  |||||||| ||||||||| |||||||||| ||   |||| ||||| ||||||||| |||||||||   ||   ||||||||||||||| ||||||||    
T  1415575 attatagagcagctatagttctgtttctattattg---tgataagaattagggtttcaatgttacaagttgta---tatatagtactactatgattcagt 1415482  T

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Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 54 - 145
Target Start/End: Original strand, 12155387 - 12155476
Alignment:
Q  54 aacaactagtaacaaaagattaaataagagaacgaaagagaaagacaatgaacgcatgatatttgttaacgtagtttgaccaattgtgccta 145  Q
    ||||||||||||||||| ||||  ||||||||||||||||||||||||||||| ||  |||||| |||||  |||| | | |||||||||||    
T  12155387 aacaactagtaacaaaaaatta--taagagaacgaaagagaaagacaatgaacacacaatattttttaacacagttcggcaaattgtgccta 12155476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 279 - 324
Target Start/End: Original strand, 33908741 - 33908786
Alignment:
Q  279 accttgccttcttccgtgtcttgtatatatgagccatacttcaaca 324  Q
    ||||| |||||||| |||||||||||||||||||||||||||||||    
T  33908741 accttaccttcttcagtgtcttgtatatatgagccatacttcaaca 33908786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 232 - 282
Target Start/End: Original strand, 10384091 - 10384141
Alignment:
Q  232 tatatagtactactacgattcagtttacaatattactcctgaaccgtacct 282  Q
    ||||||| ||||||||||||||||||| |||||||| | ||||||||||||    
T  10384091 tatatagaactactacgattcagtttataatattacccatgaaccgtacct 10384141  T

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Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 154 - 222
Target Start/End: Original strand, 12155933 - 12155998
Alignment:
Q  154 cgacaatagagcaactatagttccgtttctattactgtactgattagaatcagggtttcagtgttacaa 222  Q
    |||| |||| |||||||||||||||||||||||||||   |||| ||||| ||| ||||||||||||||    
T  12155933 cgactatagggcaactatagttccgtttctattactg---tgataagaattaggatttcagtgttacaa 12155998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 275 - 320
Target Start/End: Complemental strand, 9405171 - 9405126
Alignment:
Q  275 ccgtaccttgccttcttccgtgtcttgtatatatgagccatacttc 320  Q
    |||| ||||||||||||  |||||||||||||||||||||||||||    
T  9405171 ccgtcccttgccttctttagtgtcttgtatatatgagccatacttc 9405126  T

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Target: chr3 (Bit Score: 58; Significance: 2e-24; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 54 - 181
Target Start/End: Complemental strand, 11630186 - 11630060
Alignment:
Q  54 aacaactagtaacaaaa-gattaaataagagaacgaaagagaaagacaatgaacgcatgatatttgttaacgtagtttgaccaattgtgcctatacctct 152  Q
    ||||||||||||||||| |||||||||||||||| ||||| ||||||||||| |  | |||||||||||||  |||||| ||||||||||  |||| |||    
T  11630186 aacaactagtaacaaaaagattaaataagagaacaaaagaaaaagacaatgatcatacgatatttgttaacacagtttggccaattgtgc--atacatct 11630089  T
Q  153 acgacaatagagcaactatagttccgttt 181  Q
    ||||| ||| ||||| |||||||||||||    
T  11630088 acgactataaagcaattatagttccgttt 11630060  T

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Target: chr3; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 44 - 178
Target Start/End: Complemental strand, 8543210 - 8543073
Alignment:
Q  44 atgttgttagaacaac----tagtaacaaaagattaaataagagaacgaa-agagaaagacaatgaacgcatgatatttgttaacgtagtttgaccaatt 138  Q
    ||||||||||||||||    || ||||||||||||||||||||||||||| | |||||||||||||||  | |||||||||||||| |||| | ||||||    
T  8543210 atgttgttagaacaacaacatattaacaaaagattaaataagagaacgaagaaagaaagacaatgaacatacgatatttgttaacgcagttcggccaatt 8543111  T
Q  139 gtgcctatacctctacgacaatagagcaactatagttccg 178  Q
    |||||  ||||||   ||| ||||| ||||||||||||||    
T  8543110 gtgcc--tacctcggtgactatagaacaactatagttccg 8543073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 63 - 129
Target Start/End: Complemental strand, 8541515 - 8541448
Alignment:
Q  63 taacaaaagattaaataagagaacgaa-agagaaagacaatgaacgcatgatatttgttaacgtagtt 129  Q
    ||||||||||||||||||||||||||| |||||||||||| | || || |||||||||||||| ||||    
T  8541515 taacaaaagattaaataagagaacgaagagagaaagacaacgcacacacgatatttgttaacgcagtt 8541448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 94 - 137
Target Start/End: Complemental strand, 43361733 - 43361690
Alignment:
Q  94 aaagacaatgaacgcatgatatttgttaacgtagtttgaccaat 137  Q
    ||||||||||||| |||||||||||||||||||||||| |||||    
T  43361733 aaagacaatgaacacatgatatttgttaacgtagtttggccaat 43361690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 232 - 266
Target Start/End: Complemental strand, 8541014 - 8540980
Alignment:
Q  232 tatatagtactactacgattcagtttacaatatta 266  Q
    |||||||||||||||||||||||||||||||||||    
T  8541014 tatatagtactactacgattcagtttacaatatta 8540980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 232 - 266
Target Start/End: Complemental strand, 8543065 - 8543031
Alignment:
Q  232 tatatagtactactacgattcagtttacaatatta 266  Q
    |||||||||||||||||||||||||||||||||||    
T  8543065 tatatagtactactacgattcagtttacaatatta 8543031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 51; Significance: 4e-20; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 61 - 186
Target Start/End: Original strand, 865245 - 865368
Alignment:
Q  61 agtaacaaaagattaaataagagaacgaaagagaaagacaatgaacgcatgatatttgttaacgtagtttgaccaattgtgcctatacctctacgacaat 160  Q
    |||||||||| ||||||||||||||||||||  ||||| ||||||  || ||||||||||||||| ||| || ||||||||  | || ||||||||| ||    
T  865245 agtaacaaaaaattaaataagagaacgaaagtaaaagaaaatgaaaacacgatatttgttaacgtggttcgatcaattgtg--tttatctctacgactat 865342  T
Q  161 agagcaactatagttccgtttctatt 186  Q
    |||| | ||||| |||||||||||||    
T  865343 agagtagctataattccgtttctatt 865368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 159 - 279
Target Start/End: Original strand, 3284192 - 3284307
Alignment:
Q  159 atagagcaactatagttccgtttctattactgtactgattagaatcagggtttcagtgttacaagcaatatattatat-agtactactacgattcagttt 257  Q
    ||||| ||| ||||||||||||| |||||||||   |||  |||| ||||||| || ||||||||||| |||| |||| | ||||||||| ||| |||||    
T  3284192 atagaacaattatagttccgtttttattactgt---gat--gaattagggttttagcgttacaagcaaaatat-atattactactactacaattaagttt 3284285  T
Q  258 acaatattactcctgaaccgta 279  Q
    |||||||||||| |||||||||    
T  3284286 acaatattactcttgaaccgta 3284307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 47 - 122
Target Start/End: Original strand, 3284089 - 3284166
Alignment:
Q  47 ttgttagaacaac--tagtaacaaaagattaaataagagaacgaaagagaaagacaatgaacgcatgatatttgttaa 122  Q
    |||||||||||||  || ||||| |||||||||||| ||| ||||||  |||||||||||||  | ||||||||||||    
T  3284089 ttgttagaacaacaatactaacataagattaaataaaagaccgaaagtaaaagacaatgaacatacgatatttgttaa 3284166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0035 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 56 - 229
Target Start/End: Complemental strand, 24574 - 24407
Alignment:
Q  56 caactagtaacaaaagattaaataagagaacgaaagagaaagacaatgaacgcatgatatttgttaacgtagtttgaccaattgtgcctatacctctacg 155  Q
    ||||| |||||| |||||||||||||||||| ||||  ||||||||||||  || ||| || ||||| ||  || | |||||| ||||||  ||||| ||    
T  24574 caactggtaacagaagattaaataagagaacaaaagtaaaagacaatgaaaacacgatctt-gttaaagttattcggccaattatgccta--cctctgcg 24478  T
Q  156 acaatagagcaactatagttccgtttctattactgtactgattagaatcagggtttcagtgttacaagcaatat 229  Q
    || |||||||| || ||||||||||||||||||   | |||| ||| | || ||||| ||||||||||||||||    
T  24477 actatagagcagctgtagttccgtttctattac---agtgataagacttagagtttcggtgttacaagcaatat 24407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 55 - 106
Target Start/End: Original strand, 15077104 - 15077155
Alignment:
Q  55 acaactagtaacaaaagattaaataagagaacgaaagagaaagacaatgaac 106  Q
    |||||||||||||| ||||||||||||||||||||||  ||| |||||||||    
T  15077104 acaactagtaacaacagattaaataagagaacgaaagtaaaaaacaatgaac 15077155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 56 - 122
Target Start/End: Original strand, 43611 - 43677
Alignment:
Q  56 caactagtaacaaaagattaaataagagaacgaaagagaaagacaatgaacgcatgatatttgttaa 122  Q
    |||||||||  ||| |||||||||||||||| ||||||||||| ||| ||| ||| |||||||||||    
T  43611 caactagtataaaatgattaaataagagaacaaaagagaaagataataaacacataatatttgttaa 43677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 242 - 323
Target Start/End: Original strand, 43790 - 43870
Alignment:
Q  242 tactacgattcagtttacaatattactcctgaaccgtaccttgccttcttccgtgtcttgtatatatgagccatacttcaac 323  Q
    |||||| ||||| |||||| |||||| ||| |||||| |||||||||||||  | |||| |||||||||| |||| ||||||    
T  43790 tactacaattcaatttaca-tattacccctaaaccgtcccttgccttcttcaatatcttctatatatgagtcatatttcaac 43870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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