View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17882_high_17 (Length: 330)
Name: NF17882_high_17
Description: NF17882
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17882_high_17 |
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Alignment Details
Target: chr7 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 17 - 327
Target Start/End: Complemental strand, 4499961 - 4499651
Alignment:
| Q |
17 |
cattctttccaatataaactctactgtacactcgtttaggatccttgcttgtaatataaactctttcgttaattaaaccgtgatcgaataaaccaagctc |
116 |
Q |
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|||||||||||||||||||| |||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
4499961 |
cattctttccaatataaactgtactgtacgccggtttaggatccttgcttgtaatataaactctttcgttaattaaaccgtgaccgaataaaccaagctc |
4499862 |
T |
|
| Q |
117 |
gtgatgctatttgttggccgatatgatgaatacaaccataatagacgcgtaacatcacacaatcacagaaaaaccagacccctttaattttataataaac |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4499861 |
gtgatgctatttgttggccgatatgatgaatacaaccataatagacgcgtaacatcacacaatcacagaaaaaccagacccctttaattttataataaac |
4499762 |
T |
|
| Q |
217 |
attaacctcccctaaggtcttttaaaatatatattatatcccttttcatttaacaccgttagtactctgttggaaattaaaaatgtagtgtcttcttgat |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
4499761 |
attaacctcccctaaggtcttttaaaatatatattatatcccttttcatttaacaccgttagtactctgttagaaattaaaaatgtagtgtcttcttgat |
4499662 |
T |
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| Q |
317 |
gatgtccatct |
327 |
Q |
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|||||| |||| |
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| T |
4499661 |
gatgtcaatct |
4499651 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 204 - 247
Target Start/End: Original strand, 41805206 - 41805249
Alignment:
| Q |
204 |
ttttataataaacattaacctcccctaaggtcttttaaaatata |
247 |
Q |
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| T |
41805206 |
ttttataatagacataaacctcccctaagatcttttaaaatata |
41805249 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 204 - 245
Target Start/End: Original strand, 39673766 - 39673807
Alignment:
| Q |
204 |
ttttataataaacattaacctcccctaaggtcttttaaaata |
245 |
Q |
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|||||||||| | |||||||||||||||| |||||||||||| |
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| T |
39673766 |
ttttataatagatattaacctcccctaagttcttttaaaata |
39673807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 201 - 242
Target Start/End: Original strand, 39673843 - 39673884
Alignment:
| Q |
201 |
taattttataataaacattaacctcccctaaggtcttttaaa |
242 |
Q |
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||||||||||||| | |||||||||||||||| ||||||||| |
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| T |
39673843 |
taattttataatagatattaacctcccctaagttcttttaaa |
39673884 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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