View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17882_high_19 (Length: 299)
Name: NF17882_high_19
Description: NF17882
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17882_high_19 |
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Alignment Details
Target: chr8 (Bit Score: 223; Significance: 1e-123; HSPs: 10)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 292
Target Start/End: Complemental strand, 2874268 - 2873977
Alignment:
| Q |
1 |
ttaaagcgcatagacactaaaacgttggctgcgaactggaaacttgcatgcagaaggaaactctccaagaattgtcctggcatttgcatatgatgtcaag |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||| ||| ||||||| |||| ||||||||||||||||||||||||||||| |||||||||||| ||| |
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| T |
2874268 |
ttaaagcgcatagacactaaaacgttggctgcgaaacggagacttgcaagcaggaggaaactctccaagaattgtcctggcatgtgcatatgatgttaag |
2874169 |
T |
|
| Q |
101 |
ttgaagtcaaaaaatggatggtttatttagattgtctccgtatgtaatcttgtacatttattgagcatgcagaaattcgggccaaagatggtacatatga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2874168 |
ttgaagtcaaaaaatggatggtttatttagattgtctccgtatgtattcttgtacatttattgagcatgcagaaattcgggccaaagatggtacatatgc |
2874069 |
T |
|
| Q |
201 |
tgtgaattgtgtgttgatgtttcnnnnnnncttgacgcaaatgtgttgatgtttctagagtaacttggacttgtgagtttatagtatattct |
292 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||| |||||||||||| |||| |
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| T |
2874068 |
tgtgaattgtgtgttgatgtttctttttttcttgacgcaaatgtgttgatgtttctagagtaacttagacttgtcagtttatagtattttct |
2873977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 2847452 - 2847230
Alignment:
| Q |
1 |
ttaaagcgcatagacactaaaacgttggctgcgaactggaaacttgcatgcagaaggaaactctccaagaattgtcctggcatttgcatatgatgtcaag |
100 |
Q |
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|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2847452 |
ttaaagcgcatagacactaaaacgttggctgcgaaccggaaacttgcatgcagaaggaaactctccaagaattgtcctggcatttgcatatgatgtcaag |
2847353 |
T |
|
| Q |
101 |
ttgaagtcaaaaaatggatggtttatttagattgtctccgtatgtaatcttgtacatttattgagcatgcagaaattcgggccaaagatggtacatatga |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2847352 |
ttgaagtcaaaaaatggatggtttatttagattgtctccatatctaatcttgtacatttattgagcatgcagaaattcgggccaaagatggtacatatgc |
2847253 |
T |
|
| Q |
201 |
tgtgaattgtgtgttgatgtttc |
223 |
Q |
| |
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||||||||||||||||||||||| |
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|
| T |
2847252 |
tgtgaattgtgtgttgatgtttc |
2847230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 3160744 - 3160966
Alignment:
| Q |
1 |
ttaaagcgcatagacactaaaacgttggctgcgaactggaaacttgcatgcagaaggaaactctccaagaattgtcctggcatttgcatatgatgtcaag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3160744 |
ttaaagcgcatagacactaaaacgttggctgcgaaccggaaacttgcatgcaggaggaaactctccaagaattgtcctggcatttgcatatgatgtcaag |
3160843 |
T |
|
| Q |
101 |
ttgaagtcaaaaaatggatggtttatttagattgtctccgtatgtaatcttgtacatttattgagcatgcagaaattcgggccaaagatggtacatatga |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3160844 |
ttgaagtcaaaaaatggatggtttatttagattgtctccatatctaatcttgtacatttattgagcatgcagaaattcgggccaaagatggtacatatgc |
3160943 |
T |
|
| Q |
201 |
tgtgaattgtgtgttgatgtttc |
223 |
Q |
| |
|
||||||||||||||||||||||| |
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|
| T |
3160944 |
tgtgaattgtgtgttgatgtttc |
3160966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 82 - 292
Target Start/End: Original strand, 2797907 - 2798117
Alignment:
| Q |
82 |
atttgcatatgatgtcaagttgaagtcaaaaaatggatggtttatttagattgtctccgtatgtaatcttgtacatttattgagcatgcagaaattcggg |
181 |
Q |
| |
|
||||| || |||||| |||||||||||||||||||||||||||||||||||||||||| ||| || |||||||||||||||||||||||||||||||||| |
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|
| T |
2797907 |
atttgaatgtgatgtgaagttgaagtcaaaaaatggatggtttatttagattgtctccttatttattcttgtacatttattgagcatgcagaaattcggg |
2798006 |
T |
|
| Q |
182 |
ccaaagatggtacatatgatgtgaattgtgtgttgatgtttcnnnnnnncttgacgcaaatgtgttgatgtttctagagtaacttggacttgtgagttta |
281 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2798007 |
ccaaagatggtacatatgctgtgaattgtgtgttgatgtttctttttttcttgacgcaaatgtgttgatgtttctagagtaacttggacttgtgagttta |
2798106 |
T |
|
| Q |
282 |
tagtatattct |
292 |
Q |
| |
|
|||||| |||| |
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|
| T |
2798107 |
tagtattttct |
2798117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 123 - 292
Target Start/End: Original strand, 3146180 - 3146349
Alignment:
| Q |
123 |
ttatttagattgtctccgtatgtaatcttgtacatttattgagcatgcagaaattcgggccaaagatggtacatatgatgtgaattgtgtgttgatgttt |
222 |
Q |
| |
|
||||||| |||||||||| || ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3146180 |
ttatttaaattgtctccgcatctaatcttgtacatttattgagcatggagaaattcgggccaaagatggtacatatgatgtgaattgtgtgttgatgttt |
3146279 |
T |
|
| Q |
223 |
cnnnnnnncttgacgcaaatgtgttgatgtttctagagtaacttggacttgtgagtttatagtatattct |
292 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
3146280 |
gtttttttcttgacgcaaatgtgttgatgtttctagagtaacttggacttgtgagtttatagtattttct |
3146349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 123 - 292
Target Start/End: Complemental strand, 2888406 - 2888237
Alignment:
| Q |
123 |
ttatttagattgtctccgtatgtaatcttgtacatttattgagcatgcagaaattcgggccaaagatggtacatatgatgtgaattgtgtgttgatgttt |
222 |
Q |
| |
|
||||||| ||||||| || || ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2888406 |
ttatttaaattgtcttcgcatctaatcttgtacatttattgagcatggagaaattcgggccaaagatggtacatatgatgtgaattgtgtgttgatgttt |
2888307 |
T |
|
| Q |
223 |
cnnnnnnncttgacgcaaatgtgttgatgtttctagagtaacttggacttgtgagtttatagtatattct |
292 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
2888306 |
gtttttttcttgacgcaaatgtgttgatgtttctagagtaacttggacttgtgagtttatagtattttct |
2888237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 1 - 129
Target Start/End: Complemental strand, 2888988 - 2888860
Alignment:
| Q |
1 |
ttaaagcgcatagacactaaaacgttggctgcgaactggaaacttgcatgcagaaggaaactctccaagaattgtcctggcatttgcatatgatgtcaag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||| ||||||| ||||||| ||||||||||||||||||||||||||||||||||||| |
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|
| T |
2888988 |
ttaaagcgcatagacactaaaacgttggctgcgaacaggaaactttcatgcaggaggaaacagtccaagaattgtcctggcatttgcatatgatgtcaag |
2888889 |
T |
|
| Q |
101 |
ttgaagtcaaaaaatggatggtttattta |
129 |
Q |
| |
|
||||||||||||||||||||||||||||| |
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| T |
2888888 |
ttgaagtcaaaaaatggatggtttattta |
2888860 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 1 - 129
Target Start/End: Original strand, 3145873 - 3146002
Alignment:
| Q |
1 |
ttaaagcgcatagacactaaaacgttggctgcgaactggaaacttgcatgcagaaggaaactctccaagaattgtcctggcatttgcatatgatgtcaag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||| ||||||| ||||||| ||||||||||||||||||||||||||||||||||||| |
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|
| T |
3145873 |
ttaaagcgcatagacactaaaacgttggctgcgaaccggaaactttcatgcaggaggaaaccgtccaagaattgtcctggcatttgcatatgatgtcaag |
3145972 |
T |
|
| Q |
101 |
ttgaagtc-aaaaaatggatggtttattta |
129 |
Q |
| |
|
|||||||| ||||||||||||||||||||| |
|
|
| T |
3145973 |
ttgaagtcaaaaaaatggatggtttattta |
3146002 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 242 - 292
Target Start/End: Original strand, 3160953 - 3161003
Alignment:
| Q |
242 |
tgtgttgatgtttctagagtaacttggacttgtgagtttatagtatattct |
292 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||| |||| |
|
|
| T |
3160953 |
tgtgttgatgtttctagagtaacttagacttgtgagtttatagtattttct |
3161003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 242 - 292
Target Start/End: Complemental strand, 2847243 - 2847193
Alignment:
| Q |
242 |
tgtgttgatgtttctagagtaacttggacttgtgagtttatagtatattct |
292 |
Q |
| |
|
||||||||||||||||||||||||| ||| |||||||||||||||| |||| |
|
|
| T |
2847243 |
tgtgttgatgtttctagagtaacttagacatgtgagtttatagtattttct |
2847193 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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