View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17882_high_24 (Length: 268)
Name: NF17882_high_24
Description: NF17882
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17882_high_24 |
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Alignment Details
Target: chr5 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 16 - 253
Target Start/End: Complemental strand, 27913461 - 27913224
Alignment:
| Q |
16 |
ataagaacggaaatatttattgaaaatataaagatagttaataagcgtttgttaatatgtagttaaattgnnnnnnnaagtaggtagtttatttgttaat |
115 |
Q |
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| T |
27913461 |
ataagaacggaaatatttattgaaaatataaagatagttaataagcgtttgttaatatgtagttaaattgtttttttaagtaggtagtttatttgttaat |
27913362 |
T |
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| Q |
116 |
tcatcacaggcgctctatatagagaatctcatatactcatttattatctttttcttttaacaatttttcaatatgaattctaagaatttttcccgtctat |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
27913361 |
tcatcacaggcgctctatatagagaatctcatatactcatttattatctttttcttttaacaatttttcaatatgaattctaagaatttttctcgtctat |
27913262 |
T |
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| Q |
216 |
ctttgttatctcatcgtatgagatgaatcttcatatgt |
253 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
27913261 |
ctttgttatctcatcgtatgagatgaatcttcatatgt |
27913224 |
T |
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