View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17882_high_27 (Length: 249)
Name: NF17882_high_27
Description: NF17882
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17882_high_27 |
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Alignment Details
Target: chr8 (Bit Score: 146; Significance: 5e-77; HSPs: 11)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 76 - 233
Target Start/End: Original strand, 2874381 - 2874538
Alignment:
| Q |
76 |
tgtgattttctataagatgggagacagcagccataccttcaaatatttatttgaccgttcataatctttcaaatccatcaggcacgatgcattgcccaga |
175 |
Q |
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|||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
2874381 |
tgtgattttctataagatgggagacaacagacataccttcaaatatttatttgaccgttcataatctttcaattccatcaggcacgatgcattgcccaga |
2874480 |
T |
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| Q |
176 |
ttacaagaaaacctcaagcctacaatttccttatcctcatcgggaaaggaagtatcat |
233 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2874481 |
ttacaagaaaacctcaagcctacaatttccttatcctcatcgggaaaggaagtatcat |
2874538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 3160749 - 3160517
Alignment:
| Q |
1 |
ctttaagttgagatcctgcttgttcgtcgtgtaaaacaaagttactgnnnnnnnnnnnnnnnnnnnaacaaaagatgtgattttctataagatgggagac |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
3160749 |
ctttaagttgagatcctgcttgttcgtcgtgtaaaacaaagttactgattattattattattattaaacaaaagatgtgattttctataagatgggagac |
3160650 |
T |
|
| Q |
101 |
agcagccataccttcaaatatttatttgaccgttcataatctttcaaatccatcaggcacgatgcattgcccagattacaagaaaacctcaagcctacaa |
200 |
Q |
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||||||||| |||| ||||||||||||| | |||||||||||||||| | |||| |||||||||||||| ||||||||||||| ||||||| || |||| |
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| T |
3160649 |
agcagccatgccttaaaatatttatttgcctgttcataatctttcaattttatcaagcacgatgcattgctcagattacaagaagacctcaacccaacaa |
3160550 |
T |
|
| Q |
201 |
tttccttatcctcatcgggaaaggaagtatcat |
233 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
3160549 |
tttccttatcctcatcgggaaaggaagtatcat |
3160517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 67 - 233
Target Start/End: Original strand, 2889046 - 2889212
Alignment:
| Q |
67 |
aacaaaagatgtgattttctataagatgggagacagcagccataccttcaaatatttatttgaccgttcataatctttcaaatccatcaggcacgatgca |
166 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||| ||||||| |||||||| | |
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| T |
2889046 |
aacaagagatgtgattttctataagatgggagacagcagccataccttaaaatatttatttgcccgttcataatctttcaattccatcaagcacgatgta |
2889145 |
T |
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| Q |
167 |
ttgcccagattacaagaaaacctcaagcctacaatttccttatcctcatcgggaaaggaagtatcat |
233 |
Q |
| |
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|||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||| |||| |
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| T |
2889146 |
ttgcccagattacaagaaaacctcaagctaacaatttccctatcctcatcgggaaaggaagtttcat |
2889212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 67 - 233
Target Start/End: Complemental strand, 3145816 - 3145650
Alignment:
| Q |
67 |
aacaaaagatgtgattttctataagatgggagacagcagccataccttcaaatatttatttgaccgttcataatctttcaaatccatcaggcacgatgca |
166 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||| ||||||| ||| ||||| |
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| T |
3145816 |
aacaagagatgtgattttctataagatgggagacagcagccataccttaaaatatttatttgcccgttcataatctttcaattccatcaagcagcatgca |
3145717 |
T |
|
| Q |
167 |
ttgcccagattacaagaaaacctcaagcctacaatttccttatcctcatcgggaaaggaagtatcat |
233 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||| |||| |
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| T |
3145716 |
ttgcccagattacaagaaaacctcaagctaacaatttccctatcctcatcgggaaaggaagtttcat |
3145650 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 67 - 233
Target Start/End: Complemental strand, 2797749 - 2797583
Alignment:
| Q |
67 |
aacaaaagatgtgattttctataagatgggagacagcagccataccttcaaatatttatttgaccgttcataatctttcaaatccatcaggcacgatgca |
166 |
Q |
| |
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||||| || |||||||||||||||||||||||||||||| |||||||| ||||||||||||| |||||||||||||||||| | ||||| ||| ||||| |
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| T |
2797749 |
aacaagaggtgtgattttctataagatgggagacagcagacataccttaaaatatttatttgcccgttcataatctttcaatttcatcaagcagcatgca |
2797650 |
T |
|
| Q |
167 |
ttgcccagattacaagaaaacctcaagcctacaatttccttatcctcatcgggaaaggaagtatcat |
233 |
Q |
| |
|
|||||||||||||||||| ||||||||| ||||||||| ||||||||||||||||||||||||||| |
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|
| T |
2797649 |
ttgcccagattacaagaatgcctcaagccaacaatttccctatcctcatcgggaaaggaagtatcat |
2797583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 130 - 233
Target Start/End: Original strand, 2848723 - 2848826
Alignment:
| Q |
130 |
ccgttcataatctttcaaatccatcaggcacgatgcattgcccagattacaagaaaacctcaagcctacaatttccttatcctcatcgggaaaggaagta |
229 |
Q |
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|||||||||||||||||| | ||||| ||| ||||||||||||||||||||||| ||||||||| ||||||||| ||||||||||||||||||||||| |
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| T |
2848723 |
ccgttcataatctttcaatttcatcaagcagcatgcattgcccagattacaagaatgcctcaagccaacaatttccctatcctcatcgggaaaggaagta |
2848822 |
T |
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| Q |
230 |
tcat |
233 |
Q |
| |
|
|||| |
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| T |
2848823 |
tcat |
2848826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 134
Target Start/End: Original strand, 2847447 - 2847580
Alignment:
| Q |
1 |
ctttaagttgagatcctgcttgttcgtcgtgtaaaacaaagttactgnnnnnnnnnnnnnnnnnnnaacaaaagatgtgattttctataagatgggagac |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
2847447 |
ctttaagttgagatcctgcttgttcgtcgtgtaaaacaaagttactgattattattattattattaaacaaaagatgtgattttctataagatgggagac |
2847546 |
T |
|
| Q |
101 |
agcagccataccttcaaatatttatttgaccgtt |
134 |
Q |
| |
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||||||||| |||| ||||||||||||| ||||| |
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| T |
2847547 |
agcagccatgccttaaaatatttatttgcccgtt |
2847580 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 2874263 - 2874309
Alignment:
| Q |
1 |
ctttaagttgagatcctgcttgttcgtcgtgtaaaacaaagttactg |
47 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
2874263 |
ctttaagttgagatcctgcatgttcgtcgtgtaaaacaaagttactg |
2874309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 2888983 - 2889029
Alignment:
| Q |
1 |
ctttaagttgagatcctgcttgttcgtcgtgtaaaacaaagttactg |
47 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||| |
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|
| T |
2888983 |
ctttaagttgagatcctgcttgttcatcgtgtaaaacaaagttactg |
2889029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 3145878 - 3145833
Alignment:
| Q |
1 |
ctttaagttgagatcctgcttgttcgtcgtgtaaaacaaagttactg |
47 |
Q |
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||||||||||||||||||||||||||| ||||||||| ||||||||| |
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| T |
3145878 |
ctttaagttgagatcctgcttgttcgttgtgtaaaac-aagttactg |
3145833 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 78 - 114
Target Start/End: Original strand, 2881897 - 2881933
Alignment:
| Q |
78 |
tgattttctataagatgggagacagcagccatacctt |
114 |
Q |
| |
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||||||||||||||||||||||| |||||||||||| |
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|
| T |
2881897 |
tgattttctataagatgggagacgacagccatacctt |
2881933 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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