View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17882_high_3 (Length: 629)
Name: NF17882_high_3
Description: NF17882
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17882_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 443; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 443; E-Value: 0
Query Start/End: Original strand, 137 - 611
Target Start/End: Original strand, 31606901 - 31607375
Alignment:
| Q |
137 |
attaaacttctgattaatgttgatgaatggcaggttggtccaagaacttcaaatgatagacaaaattttccaccaaataacataattcacatgcttggag |
236 |
Q |
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| T |
31606901 |
attaaacttctgattaatgttgatgaatggcaggttggtccaagaacttcaaatgatagacaaaattttccaccaaataacataattcacatgcttggag |
31607000 |
T |
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| Q |
237 |
gtgcagggttcttatggatgggttggacaggttttaacggaggagcgccttttcaagtgggagagattacatccttggcaatattcaatactcatatgtg |
336 |
Q |
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| T |
31607001 |
gtgcagggttcttatggatgggttggacaggttttaacggaggagcgccttttcaagtgggagagattacatccttggctatattcaatactcatttgtg |
31607100 |
T |
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| Q |
337 |
cactgctacaagcatacttgtttggatttctctagatatggctgtatacaagaagggctcattgataggttctgtccaaggaatgatgactggtctcgtt |
436 |
Q |
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| T |
31607101 |
cactgctacaagcatacttgtttggatttctctagatatggctgtatacaagaaaggctcattgataggttctgtccaaggaatgatgactggtctcgtt |
31607200 |
T |
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| Q |
437 |
tgcattactccgggtgcaggtaaagctcacacaaaacgacacattcaatagttgcgagatataattctgaaaacttctttctaagcttacatgtccacaa |
536 |
Q |
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| T |
31607201 |
tgcatcacaccgggtgcaggtaaagctcacacaaaacgacacattcagtagttgcgagatataattctgaaaacttctttctaagcttacatgtccacaa |
31607300 |
T |
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| Q |
537 |
gtaatgacattatttttacctatgtatgtgaccaggattggtggatccttgggcagcaatattgatgggagcttt |
611 |
Q |
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| T |
31607301 |
gtaatgacattatttttacctatgtatgtgacaaggattggtggatccatgggcagcaatattgatgggagcttt |
31607375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 31606826 - 31606867
Alignment:
| Q |
1 |
atggtttatttcaaaactttacaaattcaagtaaaattttgc |
42 |
Q |
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| T |
31606826 |
atggtttatttcaaaactttacaagctcaagtaaaattttgc |
31606867 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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