View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17882_high_6 (Length: 479)
Name: NF17882_high_6
Description: NF17882
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17882_high_6 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 447; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 447; E-Value: 0
Query Start/End: Original strand, 10 - 460
Target Start/End: Original strand, 7665831 - 7666281
Alignment:
| Q |
10 |
attatactggaagaacaaactagttttgccggtggatagttcattaatccaacaagtgttgcaagagtttcatgcttcaccgattggagggcatgcaggc |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7665831 |
attatactggaagaacaaactagttttgccggtggatagttcattaatccaacaagtgttgcaagagtttcatgcttcaccgattggagggcatgcaggc |
7665930 |
T |
|
| Q |
110 |
attactaggactatggcacgaataagtgctgaattttattggccaaatatgaagacggcggttcacaagttcatcacagaatgtctgatctgtcagcagg |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7665931 |
attactaggactatggcacgaataagtgctgaattttattggccaaatatgaagacggcggttcacaagttcatcacagaatgtctgatctgtcagcagg |
7666030 |
T |
|
| Q |
210 |
ctaaacatatgactacactgccagcagggttgttgcagcctctaccaatacccactcaggtatgggaagatgttactatggattttattactgacttgcc |
309 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7666031 |
ctaaacatatgactacactgccagcagggttgttgcagcctctgccaatacccactcaggtatgggaagatgttactatggattttattactgacttgcc |
7666130 |
T |
|
| Q |
310 |
attatcttgtggctttacagccattctagtggttgtggatagattgactaagtacgctcatttcatgccattgaagcctgactattctagtaaatctgtt |
409 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7666131 |
attatcttgtggctttacagccattctagtggttgtggatagattgactaagtacgctcatttcatgccattgaagcctgactattctagtaaatctgtt |
7666230 |
T |
|
| Q |
410 |
gatgaagtttttatgactaatatcgtcaaattacatggcatacctaagtcc |
460 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7666231 |
gatgaagtttttatgactaatatcgtcaaattacatggcatacctaagtcc |
7666281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 266 - 384
Target Start/End: Complemental strand, 9620719 - 9620601
Alignment:
| Q |
266 |
caggtatgggaagatgttactatggattttattactgacttgccattatcttgtggctttacagccattctagtggttgtggatagattgactaagtacg |
365 |
Q |
| |
|
||||||||||| ||||| ||||||||||||||||||| |||||| |||||| ||| ||||| | ||| | || || || ||||| ||| ||| || | |
|
|
| T |
9620719 |
caggtatgggatgatgtaactatggattttattactggattgccactatcttttggttttactgttattatggtcgtcgtagataggctgagtaaatatg |
9620620 |
T |
|
| Q |
366 |
ctcatttcatgccattgaa |
384 |
Q |
| |
|
||||||||||||| ||||| |
|
|
| T |
9620619 |
ctcatttcatgcccttgaa |
9620601 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 266 - 384
Target Start/End: Original strand, 31284451 - 31284569
Alignment:
| Q |
266 |
caggtatgggaagatgttactatggattttattactgacttgccattatcttgtggctttacagccattctagtggttgtggatagattgactaagtacg |
365 |
Q |
| |
|
|||||||| || ||||| ||||||||||||||||||| |||||| |||||| ||| ||||| | ||| | || || || ||||| ||| ||| || | |
|
|
| T |
31284451 |
caggtatgtgatgatgtaactatggattttattactggattgccactatcttttggttttactgttattatggtcgtcgtagataggctgagtaaatatg |
31284550 |
T |
|
| Q |
366 |
ctcatttcatgccattgaa |
384 |
Q |
| |
|
||||||||||||| ||||| |
|
|
| T |
31284551 |
ctcatttcatgcccttgaa |
31284569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University