View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17882_low_1 (Length: 803)

Name: NF17882_low_1
Description: NF17882
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17882_low_1
NF17882_low_1
[»] chr8 (4 HSPs)
chr8 (465-788)||(9658970-9659296)
chr8 (354-410)||(9658859-9658915)
chr8 (248-300)||(9658751-9658803)
chr8 (11-52)||(9658290-9658331)
[»] chr5 (2 HSPs)
chr5 (217-300)||(12877724-12877807)
chr5 (194-300)||(21589296-21589402)
[»] chr3 (1 HSPs)
chr3 (194-300)||(2667870-2667976)
[»] chr1 (2 HSPs)
chr1 (208-300)||(6650617-6650709)
chr1 (194-300)||(33700735-33700841)
[»] chr4 (2 HSPs)
chr4 (181-270)||(37109343-37109432)
chr4 (209-266)||(42644906-42644963)


Alignment Details
Target: chr8 (Bit Score: 288; Significance: 1e-161; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 465 - 788
Target Start/End: Original strand, 9658970 - 9659296
Alignment:
Q  465 agtctcatttggcttagttttatcacatttccttattagtcacttaaatatattatatgcatttgttaaatgatt--gttttgagttgtgacttatgtat 562  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||    
T  9658970 agtctcatttggcttagttttatcacatttccttattagtcacttaaatatattatatgcatttgttaaatgattatgttttgagttgtgacttatgtat 9659069  T
Q  563 aatagttaagtatttttaatttgtagactttgatggtttcaacttccaccttgttaatttggtcgttaggcattaagactattgtttttg-gcttttgtt 661  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| ||    
T  9659070 aatagttaagcatttttaatttgtagactttgatggtttcaacttccaccttgttaatttggtcgttaggcattaagactattgtttttgtgtttttttt 9659169  T
Q  662 gagtggctaagcaccacatctaacatcagctctccatagtcaaactttgatggtttccacctttacttgctagttaagctttgtcctaaaacagaaattc 761  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9659170 gagtggcaaagcaccacatctaacatcagctctccatagtcaaactttgatggtttccacctttacttgctagttaagctttgtcctaaaacagaaattc 9659269  T
Q  762 gataagtgcttaaacaagggtcaaact 788  Q
    ||||||||||||||||||||| |||||    
T  9659270 gataagtgcttaaacaagggttaaact 9659296  T

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Target: chr8; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 354 - 410
Target Start/End: Original strand, 9658859 - 9658915
Alignment:
Q  354 gttagacttccctaaaattgggttcatcaataatgaccttttatcccagatactaac 410  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9658859 gttagacttccctaaaattgggttcatcaataatgaccttttatcccagatactaac 9658915  T

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Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 248 - 300
Target Start/End: Original strand, 9658751 - 9658803
Alignment:
Q  248 tctccggttcgattatctctggtactagtttaggtgggatagtttaacttctt 300  Q
    ||||||||||||||||||||||||||| ||||| ||||||| |||||||||||    
T  9658751 tctccggttcgattatctctggtactaatttagatgggataatttaacttctt 9658803  T

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Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 11 - 52
Target Start/End: Original strand, 9658290 - 9658331
Alignment:
Q  11 catcatcaagggacctaaattccctgcataaattattgcgtg 52  Q
    |||| |||||||||||||||||||||||||||||||||||||    
T  9658290 catcttcaagggacctaaattccctgcataaattattgcgtg 9658331  T

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Target: chr5 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 217 - 300
Target Start/End: Original strand, 12877724 - 12877807
Alignment:
Q  217 ttgggatctaggagtatgtttttcctcaatgtctccggttcgattatctctggtactagtttaggtgggatagtttaacttctt 300  Q
    ||||||| | ||||| ||||| ||||||||||||| ||||||||| |||||||||||| |||||||||| || |||| ||||||    
T  12877724 ttgggatttgggagtgtgtttctcctcaatgtctcaggttcgattctctctggtactaatttaggtgggctaatttagcttctt 12877807  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 194 - 300
Target Start/End: Original strand, 21589296 - 21589402
Alignment:
Q  194 tgggttggcctgtcggtattgtcttgggatctaggagtatgtttttcctcaatgtctccggttcgattatctctggtactagtttaggtgggatagttta 293  Q
    ||||||||||||  ||||||| ||||||| || ||||| || |  ||||| ||||||| |||||||||  ||||||| | | |||||||||| |||||||    
T  21589296 tgggttggcctggtggtattggcttgggacctgggagtctgctactcctcgatgtctcaggttcgattccctctggtgccaatttaggtgggctagttta 21589395  T
Q  294 acttctt 300  Q
     ||||||    
T  21589396 gcttctt 21589402  T

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Target: chr3 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 194 - 300
Target Start/End: Original strand, 2667870 - 2667976
Alignment:
Q  194 tgggttggcctgtcggtattgtcttgggatctaggagtatgtttttcctcaatgtctccggttcgattatctctggtactagtttaggtgggatagttta 293  Q
    ||||||||||||  ||||||| |||||||||| ||||| || | |||||| | ||||| ||||||||||||||| ||   | |||||||||| |||||||    
T  2667870 tgggttggcctggtggtattggcttgggatctgggagtgtgctcttcctcgaggtctcaggttcgattatctctagtgtcaatttaggtgggctagttta 2667969  T
Q  294 acttctt 300  Q
     ||||||    
T  2667970 gcttctt 2667976  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 208 - 300
Target Start/End: Original strand, 6650617 - 6650709
Alignment:
Q  208 ggtattgtcttgggatctaggagtatgtttttcctcaatgtctccggttcgattatctctggtactagtttaggtgggatagtttaacttctt 300  Q
    ||||||| |||||||||  |||||||| |  ||||||||||||| ||||||||| ||||||||   | |||||||||  ||||||| ||||||    
T  6650617 ggtattggcttgggatcggggagtatgctcctcctcaatgtctcaggttcgattctctctggtgtcaatttaggtggattagtttagcttctt 6650709  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 194 - 300
Target Start/End: Complemental strand, 33700841 - 33700735
Alignment:
Q  194 tgggttggcctgtcggtattgtcttgggatctaggagtatgtttttcctcaatgtctccggttcgattatctctggtactagtttaggtgggatagttta 293  Q
    |||||||||||   ||||||| ||||| |||| ||||| || |  ||||||| ||||| ||||||||| |||||||| | | |||| | ||| |||||||    
T  33700841 tgggttggcctagtggtattggcttggaatctgggagtgtgctcctcctcaaggtctcaggttcgattctctctggtgccaatttaagggggttagttta 33700742  T
Q  294 acttctt 300  Q
    |||||||    
T  33700741 acttctt 33700735  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 270
Target Start/End: Complemental strand, 37109432 - 37109343
Alignment:
Q  181 atattaacacacatgggttggcctgtcggtattgtcttgggatctaggagtatgtttttcctcaatgtctccggttcgattatctctggt 270  Q
    |||||||| ||| |||||||||||   ||||||| ||||||| || ||||| || |  ||||||| ||||| ||||||||| ||||||||    
T  37109432 atattaacccacttgggttggcctagtggtattggcttgggacctgggagtgtgctcctcctcaaggtctcaggttcgattctctctggt 37109343  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 209 - 266
Target Start/End: Complemental strand, 42644963 - 42644906
Alignment:
Q  209 gtattgtcttgggatctaggagtatgtttttcctcaatgtctccggttcgattatctc 266  Q
    |||||| ||||||||||  |||| |||| |||||||| ||||| ||||||||||||||    
T  42644963 gtattgacttgggatctgagagtgtgttcttcctcaaagtctcaggttcgattatctc 42644906  T

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