View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17882_low_11 (Length: 432)
Name: NF17882_low_11
Description: NF17882
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17882_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 352; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 1 - 413
Target Start/End: Complemental strand, 49889804 - 49889391
Alignment:
| Q |
1 |
aaaaccagcaacatatacgggttaaaagaagcaatatctacttaatcacgttaaatatgtgtcgaaatcctttgccaatgcttctttgataatttgagac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49889804 |
aaaaccagcaacatatacgggttaaaagaagcaatatctacttaatcacgttaaatatgtgtcgaaatcctttgccaatgcttctttgataatttgagac |
49889705 |
T |
|
| Q |
101 |
acactttttggaacnnnnnnn-ggttttggaagaacggatgaaatagcaagtaggttgtgatagaaaagtgtagtaaaagtgagctgggcaatgttagaa |
199 |
Q |
| |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49889704 |
acactttttggaacaaaaaaaaggttttggaagaacggatgaaatagcaagtaggttgtgatagaaaagtgtagtaaaagtgagctgggcaatgttagaa |
49889605 |
T |
|
| Q |
200 |
acagattggttcgtaagtcccaatcttgagcgaactagacgtaattcccgatcccaaacgaccgggaattaaaacctgatgggagcatttttggcatttc |
299 |
Q |
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|||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49889604 |
acagattgattcgtaagtcccaatcttgagtgaactagacgtaattcccgatcccaaacgaccgggaattaaaacctgatgggagcatttttggcatttc |
49889505 |
T |
|
| Q |
300 |
aaggtgtatgtgagcaattaaagatgttttaagattaannnnnnnattgtttctttaataagcccagatacaaactagcaaaataaacaagaagcccaac |
399 |
Q |
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|||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49889504 |
aaggtgtatgtgagcaattaaagatgttttaagagtaattttattattgtttctttaataagcccagatacaaactagcaaaataaacaagaagcccaac |
49889405 |
T |
|
| Q |
400 |
ccataataacctaa |
413 |
Q |
| |
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|||||||||||||| |
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| T |
49889404 |
ccataataacctaa |
49889391 |
T |
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