View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17882_low_15 (Length: 355)
Name: NF17882_low_15
Description: NF17882
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17882_low_15 |
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Alignment Details
Target: chr5 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 1 - 333
Target Start/End: Complemental strand, 15261351 - 15261018
Alignment:
| Q |
1 |
tcaattcaacacctaatcatttttcctctnnnnnnn-cacctaatcattttcaagtgtgaattacttttnnnnnnnngacataatatgagacacatgatt |
99 |
Q |
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| T |
15261351 |
tcaattcaacacctaatcatttttcctctaaaaaaaacacctaatcattttcaagtgtgaattacttttaaaaaaaagacataatatgagacacatgatt |
15261252 |
T |
|
| Q |
100 |
agttcaaagaagacaaagttatgcattaacatacctgtataatgtgttggagaagaactagtggcatggtgaagctgagtttgagattttgtaagagaca |
199 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15261251 |
agtttaaagaagacaaagttatgcattaacatacctgtataatgtgttggagaagaactagtggcatggtgaagctgagtttgagattttgtaagagaca |
15261152 |
T |
|
| Q |
200 |
aagggtaaaagtataaataaagaagaacaatgggtaagagagctatgagaagtagaagatgaagtgtatatggaagaagggtcttagagagtgaaattga |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15261151 |
aagggtaaaagtataaataaagaagaacaatgggtaagagagctatgagaagtagaagatgaagtgtatatggaagaagggtcttagagagtgaaattga |
15261052 |
T |
|
| Q |
300 |
atcatctttcattgtacttttcattttgaaagca |
333 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
15261051 |
atcatctttcattgtacttttcattttgaaagca |
15261018 |
T |
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