View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17882_low_16 (Length: 343)
Name: NF17882_low_16
Description: NF17882
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17882_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 18 - 333
Target Start/End: Complemental strand, 51352504 - 51352185
Alignment:
| Q |
18 |
ctgcagacatctgcgaccagatagtgttccaatgactatcatctacacctcttcccgtattaacatttatc---tttttcatgggagattatttgtaagt |
114 |
Q |
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| T |
51352504 |
ctgcagacatctgcgaccagatagtgttccaatgactatcatctacacctcttcccgtattaacatttatcatctttttcatgggagattatttgtaagt |
51352405 |
T |
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| Q |
115 |
aaagtaacagcgtttttaaattttaatattggatgaatgattcattttgttgttgttgttacaggcctgaggacgttgatgaagttcctgaacaactaca |
214 |
Q |
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| T |
51352404 |
aaagtaacagcgtttttaaattttaatattggatgaatgattcattttgttgttgttgttacaggcctgaggacgttgatgaagttcctgaacaactaca |
51352305 |
T |
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| Q |
215 |
acggggttacgcaattttaatgtgtagacaattgagtctacacttgagagggggtagctcac-aattgaatatgaatgaatattacagatttgcataaaa |
313 |
Q |
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| T |
51352304 |
acggggttacgcaattttaatgtgtagacaattgagtctacacttgagagggggtagctcacaaattgaatatgaatgaatattacggatttgcataaaa |
51352205 |
T |
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| Q |
314 |
tatctatatttcggtctctg |
333 |
Q |
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||||||||| ||| |||||| |
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| T |
51352204 |
tatctatatctcgatctctg |
51352185 |
T |
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