View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17882_low_17 (Length: 338)
Name: NF17882_low_17
Description: NF17882
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17882_low_17 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 292; Significance: 1e-164; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 14 - 325
Target Start/End: Original strand, 32089889 - 32090200
Alignment:
| Q |
14 |
aatataatgagcaaaagatttttattgaattaaattcacaataaaatatattgagtttgaagtggtaaaaatattattaattaaaaggtagaattgctaa |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32089889 |
aatataatgagcaaaagatttttattgaattaaattcacaataaaatatattgagcttgaagtggtaaaaatattattaattaaaaggtagaattgctaa |
32089988 |
T |
|
| Q |
114 |
acaagtaattgacaatatattcaaaataaaaaggtcactcatttgggaacaaattatttttacaaatgaatcactcattgaaaaatgagggagtagccaa |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32089989 |
acaagtaattgacaatatattcaaaataaaaaggtcactcattttggaacaaattatttttacaaatgaatcactcattgaaaaatgagggagtagccaa |
32090088 |
T |
|
| Q |
214 |
tataaaaactccatgttttttgtcttaagaaaataaacccgtgttataaaatttatacttgcactagcaaatgccattttttatattgggaactttaatt |
313 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
32090089 |
tataaaaactccatgttttttgccttaagaaaataaacccgtgttataaaatttatacttgcactagcaaatgacattttttatattgggaactttaatt |
32090188 |
T |
|
| Q |
314 |
gaacacatatgt |
325 |
Q |
| |
|
||||||||||| |
|
|
| T |
32090189 |
aaacacatatgt |
32090200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 98
Target Start/End: Complemental strand, 8618179 - 8618134
Alignment:
| Q |
53 |
aataaaatatattgagtttgaagtggtaaaaatattattaattaaa |
98 |
Q |
| |
|
|||| |||||||||| || ||||||||||||||| ||||||||||| |
|
|
| T |
8618179 |
aatataatatattgaattggaagtggtaaaaatagtattaattaaa |
8618134 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University