View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17882_low_2 (Length: 659)
Name: NF17882_low_2
Description: NF17882
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17882_low_2 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 412; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 220 - 659
Target Start/End: Complemental strand, 43102469 - 43102030
Alignment:
| Q |
220 |
atcctcaatttctttcttctttcacatcttttaatttaaattcctaaattcaaaagtgttaaaattagagtacctaatttttaacaacaatgtcaccgtt |
319 |
Q |
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| T |
43102469 |
atcctcaatttctttcttctttcacttcttttaatttaaattcctaaattcaaaagtgttaaaattagagtacctaatttttaacaacaatgtcaccgtt |
43102370 |
T |
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| Q |
320 |
taagaacaatatagtttgaatttacgaacaaaaaataatgagtcattcatatccaacgtaacgtgttatgaatgaacacacgtgattgttgttcattttt |
419 |
Q |
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| T |
43102369 |
taagagcaatatagtttgaatttacgaacaaaaaataatgagtcattcatgtccaatgtaacgcgttatgaatgaacacacgtgattgttgttcattttt |
43102270 |
T |
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| Q |
420 |
agttgtggttcacagtcacaaaacataacataaatgataacaatacaatataaacgtaacttaaaaacaaactgtaaggattttggtctccaactccaaa |
519 |
Q |
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| T |
43102269 |
agttgcggttcacggtcacaaaacataacataaatgataacaatacaatataaacgtaacttaaaaacaaactgtaaggattttggtctccaactccaaa |
43102170 |
T |
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| Q |
520 |
catcgatgaacttggacaaaactcaaatattagcaaacatacttttggggatgatcacgatgttggtcaatgtttaactaaaaaacacattcaattattt |
619 |
Q |
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| T |
43102169 |
catcgatgaacttggacaaaactcaaatattagcaaacatacttttggggatgatcacgatgttggtcaatgtttaactaaaaaacacattcaattattt |
43102070 |
T |
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| Q |
620 |
cacttttccctcatcatgccccgtccattatatttaattt |
659 |
Q |
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| T |
43102069 |
cacttttccctcatcatgccccgtccattatatttaattt |
43102030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 20 - 104
Target Start/End: Complemental strand, 43102693 - 43102613
Alignment:
| Q |
20 |
cgccctacctcccaagttgatatatttatttcctcaagaccccatatatagtcctttatataatatcaataagaggctgccaagt |
104 |
Q |
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| T |
43102693 |
cgccctacctcccaagttgatatatttatttcctcaagacccc----atagtcctttatataatatcaataagaggctgccaagt |
43102613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 113 - 178
Target Start/End: Complemental strand, 43102542 - 43102477
Alignment:
| Q |
113 |
taaagaaaacgcttagcgatacccaggaaatcatcattaaaataaacacacataacattaatctta |
178 |
Q |
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| T |
43102542 |
taaagaaaacgcttagcgatacccaggaaatcatcattaaaataaacacacataacattaatctta |
43102477 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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