View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17882_low_20 (Length: 317)
Name: NF17882_low_20
Description: NF17882
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17882_low_20 |
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Alignment Details
Target: chr8 (Bit Score: 191; Significance: 1e-104; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 17 - 300
Target Start/End: Complemental strand, 14542907 - 14542624
Alignment:
| Q |
17 |
aagaacatggctactgctacaagaacagcttgtaagaaatccatccacccaaaatttgataaacttttttctataattacatcccatgataaaattggtt |
116 |
Q |
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| T |
14542907 |
aagaacattgcaactgcaacaagaacagcttgtaagaaatccatccacccaaaatttgataaacttttttctataattacatcccatgacaaaattggtt |
14542808 |
T |
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| Q |
117 |
tcttttcttgctcaatattggaatgagattcaggtacattaatttgtactgaaccttccatagctattgaaaatgnnnnnnnnnnnnnnnnnnnnnnngt |
216 |
Q |
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| T |
14542807 |
tcttttcttgctcaatattggaatgagattcaggtacattaatttgtactgaaccttccattgctattgaaaatgttttttggtattttttttgttttgt |
14542708 |
T |
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| Q |
217 |
tatgatgatgtttgaggttgaggaatgtgagggatgagtgtgtggttttatagtgcacaaagacaatttaaaatctactatttt |
300 |
Q |
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| T |
14542707 |
tatgatgatgtttgaggttgaggaatgtgagggatgagtgtgtggctttatagtgcacaaagacaatttaaaatctactatttt |
14542624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 17 - 185
Target Start/End: Original strand, 14580680 - 14580848
Alignment:
| Q |
17 |
aagaacatggctactgctacaagaacagcttgtaagaaatccatccacccaaaatttgataaacttttttctataattacatcccatgataaaattggtt |
116 |
Q |
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| T |
14580680 |
aagaacattgcaactgcaacaagaacagcttgtaagaaatccatccacccaaaatttgataaacttttttctataattacatcccatgacaaaattggtt |
14580779 |
T |
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| Q |
117 |
tcttttcttgctcaatattggaatgagattcaggtacattaatttgtactgaaccttccatagctattg |
185 |
Q |
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| T |
14580780 |
tcttttcttgctcaatattggaatgagattcaagtacattaatttgtactgaaccttccattgctattg |
14580848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 222 - 285
Target Start/End: Original strand, 14580887 - 14580952
Alignment:
| Q |
222 |
tgatgtttgaggttgaggaa--tgtgagggatgagtgtgtggttttatagtgcacaaagacaattt |
285 |
Q |
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| T |
14580887 |
tgatgtttgaggttgaagatattgtgagggatgagtgtgtggttttatagtgcacaaggacaattt |
14580952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 120; Significance: 2e-61; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 17 - 184
Target Start/End: Original strand, 35623010 - 35623177
Alignment:
| Q |
17 |
aagaacatggctactgctacaagaacagcttgtaagaaatccatccacccaaaatttgataaacttttttctataattacatcccatgataaaattggtt |
116 |
Q |
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|||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||| |
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| T |
35623010 |
aagaacattgctattgctacaagaacagcttgtaagaaatccatccacccaaaatttgataaacttttttctatgattacatcccatgataaccttggtt |
35623109 |
T |
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| Q |
117 |
tcttttcttgctcaatattggaatgagattcaggtacattaatttgtactgaaccttccatagctatt |
184 |
Q |
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| T |
35623110 |
tattttcttgctcaatattggaacgagattcaggtacatcaatttgcaccggaccttccattgctatt |
35623177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 17 - 105
Target Start/End: Original strand, 34263903 - 34263991
Alignment:
| Q |
17 |
aagaacatggctactgctacaagaacagcttgtaagaaatccatccacccaaaatttgataaacttttttctataattacatcccatga |
105 |
Q |
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| T |
34263903 |
aagaacatagcaaatgctacaagaacagcttgaaagaaatccatccaaccaaaatttgataaacttttttctattatttcatcccatga |
34263991 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 17 - 108
Target Start/End: Complemental strand, 37599855 - 37599764
Alignment:
| Q |
17 |
aagaacatggctactgctacaagaacagcttgtaagaaatccatccacccaaaatttgataaacttttttctataattacatcccatgataa |
108 |
Q |
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| T |
37599855 |
aagaacatagcaattgctacaagaacagcttgaaataaatccattcaaccaaaatttgataaaaaaatttctataatttcatcccatgataa |
37599764 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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