View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17882_low_22 (Length: 290)
Name: NF17882_low_22
Description: NF17882
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17882_low_22 |
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Alignment Details
Target: chr4 (Bit Score: 170; Significance: 3e-91; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 18 - 199
Target Start/End: Original strand, 40820088 - 40820269
Alignment:
| Q |
18 |
atatcatactctactgcattatcacacatcacacatgtcatttggaaaaggacacctccatggtggaagttgaatctggtgggaaggcaaaactggagta |
117 |
Q |
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| T |
40820088 |
atatcatactctactgcattatcacacatcacacatgtcatttggaaaagaacacctccatggtggaggttgaatctggtgggaaggcaaaactggagta |
40820187 |
T |
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| Q |
118 |
aacggcaacaaaaatgtttgatttttggaggtaatggcaacgatcaagcctcattcgagcaatagaagtttctatctgtata |
199 |
Q |
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| T |
40820188 |
aacggcaacaaaaatgtttgatttttggaggtaatggcaacgatcaagcctcattcgagcaacagaagtttctatctgtata |
40820269 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 242 - 280
Target Start/End: Original strand, 40820312 - 40820350
Alignment:
| Q |
242 |
cctaactcctaagatatagaaacgagttaatgacctatg |
280 |
Q |
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| T |
40820312 |
cctaactcctaagagatagaaacgagttaatgacctatg |
40820350 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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