View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17882_low_24 (Length: 280)
Name: NF17882_low_24
Description: NF17882
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17882_low_24 |
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Alignment Details
Target: chr2 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 18 - 263
Target Start/End: Complemental strand, 23990482 - 23990237
Alignment:
| Q |
18 |
atcccttgttgaagttttaaaacccagccaaaagcataattgataaataatttgagtgtagaaaccaaattggcaaaataagaaaaagctgaatgaggtg |
117 |
Q |
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| T |
23990482 |
atcccttgttgaagttttaaaacccagccaaaagcataattgataaataatttgagtgtagaaaccaaattggcaaaataagaaaaagctgaatgaggtg |
23990383 |
T |
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| Q |
118 |
atctttcacgtgggagtctataataagaaaaaactcgaaaaatggcgtgcttggtttggttcacatggagtattagaaaactcattaaaatagattgcat |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23990382 |
atctttcacgtgggagtctataataagaaaaaactcgaaaaatggcgtgcttggtttggttcacatggagtattagaaaactcattaaaatagattgcat |
23990283 |
T |
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| Q |
218 |
atcacatattaatggcgtgttctattttttaagaacatcgattatc |
263 |
Q |
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| T |
23990282 |
atcacatattaatggcgtgttctattttttaagaacatcgattatc |
23990237 |
T |
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