View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17882_low_28 (Length: 266)
Name: NF17882_low_28
Description: NF17882
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17882_low_28 |
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Alignment Details
Target: chr3 (Bit Score: 181; Significance: 7e-98; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 17 - 259
Target Start/End: Complemental strand, 42474030 - 42473799
Alignment:
| Q |
17 |
ttgagcatgttggtggagacatgtttgtcagtattccaaaggctgatgctgtttttatgaaggtgcattttataaatcttacctaccctaacaaaatgtt |
116 |
Q |
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| T |
42474030 |
ttgagcatgttggtggagacatgtttgtcagtattccaaaggctgatgctgtttttatgaaggtgcattttataaatcttacctaccctaacacaatgtt |
42473931 |
T |
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| Q |
117 |
ttggccttcttctttatgctaacataatctacgcagtagcaccgacacttaagatagaggaaatgtcaggtgtcattgtcaacatgtttatatccaagct |
216 |
Q |
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| T |
42473930 |
ttggccttcttctatacgctaa-----------cagtagcaccgacacttgagatagaggaaatgtcaggtgtcattgtcaacatgtttatatccatgct |
42473842 |
T |
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| Q |
217 |
ttccataacatagttgttttagcctttacatttgatattcttc |
259 |
Q |
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| T |
42473841 |
ttccataacatagttgttttagcctttacatttgatatacttc |
42473799 |
T |
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Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 22 - 81
Target Start/End: Original strand, 43002126 - 43002185
Alignment:
| Q |
22 |
catgttggtggagacatgtttgtcagtattccaaaggctgatgctgtttttatgaaggtg |
81 |
Q |
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| T |
43002126 |
catgttggtggagacatgtttgtgagtgttccaaaagctgatgccattttcatgaaggtg |
43002185 |
T |
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